Sro920_g220210.1 (Contig2508.g20521)

Aliases : Contig2508.g20521

Description : Putative E3 ubiquitin-protein ligase LIN

Gene families : OG_01_0000010 (OrthoFinder) Phylogenetic Tree(s): OG0000010_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: Sro920_g220210.1
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
PTI_10G02880.1 No alias U box domain [Interproscan]. 0.02 OrthoFinder
Sro181_g079100.1 Contig4257.g32237 U-box domain-containing protein 12 0.03 OrthoFinder
Sro4460_g354040.1 Contig3522.g27241 U box domain [Interproscan]. 0.03 OrthoFinder
Sro877_g214590.1 Contig139.g1540 Putative E3 ubiquitin-protein ligase LIN 0.02 OrthoFinder
Sro920_g220230.1 Contig2508.g20523 U-box domain-containing protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
InterPro domains Description Start Stop
IPR003613 Ubox_domain 10 79
No external refs found!