Sro877_g214590.1 (Contig139.g1540)

Aliases : Contig139.g1540

Description : Putative E3 ubiquitin-protein ligase LIN

Gene families : OG_01_0000010 (OrthoFinder) Phylogenetic Tree(s): OG0000010_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sro877_g214590.1
Cluster	HCCA: Cluster_298

Target	Alias	Description	ECC score	Gene Family Method
Sro121_g058770.1	Contig1619.g14631	U-box domain-containing protein	0.01	OrthoFinder
Sro1511_g278700.1	Contig2369.g19497	E3 ubiquitin-protein ligase	0.02	OrthoFinder
Sro181_g079100.1	Contig4257.g32237	U-box domain-containing protein 12	0.01	OrthoFinder
Sro2403_g326410.1	Contig1134.g10895	U-box domain-containing protein	0.02	OrthoFinder
Sro4460_g354040.1	Contig3522.g27241	U box domain [Interproscan].	0.01	OrthoFinder
Sro4_g002930.1	Contig3815.g29211	Putative E3 ubiquitin-protein ligase LIN	0.02	OrthoFinder
Sro920_g220210.1	Contig2508.g20521	Putative E3 ubiquitin-protein ligase LIN	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	8	79

External Links

No external refs found!