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  5. Sro874_g214140.1

Sro874_g214140.1 (Contig589.g7365)


Aliases : Contig589.g7365

Description : Protein L13


Gene families : OG_01_0000958 (OrthoFinder) Phylogenetic Tree(s): OG0000958_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro874_g214140.1
Cluster HCCA: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
Cre06.g264350 30779581, PRPL13 Protein biosynthesis.organelle translation... 0.06 OrthoFinder
Cre09.g405200 30781496, MRPL13 Protein biosynthesis.organelle translation... 0.06 OrthoFinder
Cz04g19090.t1 No alias Ribosomal protein L13 [Interproscan]. 0.02 OrthoFinder
Cz11g15150.t1 No alias Ribosomal protein L13 [Interproscan]. 0.04 OrthoFinder
Dusal.0355s00001.1 33196340 Ribosomal protein L13 [Interproscan]. 0.01 OrthoFinder
Dusal.0422s00009.1 33186843 Ribosomal protein L13 [Interproscan]. 0.01 OrthoFinder
OT_03G01410.1 No alias Ribosomal protein L13 [Interproscan]. 0.06 OrthoFinder
OT_06G01030.1 No alias Ribosomal protein L13 [Interproscan]. 0.06 OrthoFinder
PTI_16G01960.1 No alias Ribosomal protein L13 [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold32299.1 32299.1 Ribosomal protein L13 [Interproscan]. 0.01 OrthoFinder
TPCG02710.1 No alias Ribosomal protein L13 [Interproscan]. 0.03 OrthoFinder
Transcript_contig_3807 3807 Ribosomal protein L13 [Interproscan]. 0.02 OrthoFinder
Transcript_contig_89766 89766 Ribosomal protein L13 [Interproscan]. 0.01 OrthoFinder
Vocar.0002s0545.1 32890832 Ribosomal protein L13 [Interproscan]. 0.03 OrthoFinder
Vocar.0062s0012.1 32892907 Ribosomal protein L13 [Interproscan]. 0.03 OrthoFinder
XM_002501391.1 MICPUN_97280, 97280 Ribosomal protein L13 [Interproscan]. 0.06 OrthoFinder
XM_003059440.1 MicpuC2_27251, 27251 Ribosomal protein L13 [Interproscan]. 0.04 OrthoFinder
XM_003062638.1 MicpuC2_7563, 7563 Ribosomal protein L13 [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20835.1_5043 PRW20835 50S ribosomal chloroplastic 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
CC GO:0000313 organellar ribosome IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005761 mitochondrial ribosome IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006555 methionine metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043461 proton-transporting ATP synthase complex assembly IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 12 135
No external refs found!