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  5. Sro860_g212120.1

Sro860_g212120.1 (Contig2239.g18594)


Aliases : Contig2239.g18594

Description : ISWI chromatin-remodeling complex ATPase ISW2


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro860_g212120.1
Cluster HCCA: Cluster_266

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021275.25 tig00021275_g19885.t1 Probable chromatin-remodeling complex ATPase chain... 0.02 OrthoFinder
Cre07.g325700 30774388 ATP-dependent helicase BRM OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre16.g647602 30777036 ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Dusal.1946s00001.1 33193641 Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
EOD18155 No alias High mobility group box domain; ISWI, HAND domain;... 0.02 OrthoFinder
EOD26260 No alias SNF2-related, N-terminal domain; ISWI, HAND domain;... 0.02 OrthoFinder
EOD36957 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
PTI_02G06230.1 No alias Bromodomain; Helicase, C-terminal; Snf2, ATP coupling... 0.02 OrthoFinder
Transcript_contig_67500 67500 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
XM_002503134.1 MICPUN_59225, 59225 SNF2 super family 0.01 OrthoFinder
lcl|BLLF01000001.1_cds_GFH05549.1_26 HaLaN_00029, GFH05549 Helicase, C-terminal; SLIDE domain; ISWI, HAND domain... 0.01 OrthoFinder
lcl|BLLF01000160.1_cds_GFH08429.1_2906 HaLaN_03388, GFH08429 Chromo domain; Helicase, C-terminal; SNF2-related,... 0.01 OrthoFinder
lcl|BLLF01006096.1_cds_GFH31943.1_26420 HaLaN_31078, GFH31943 SNF2-related, N-terminal domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60614.1_4411 PRW60614 ATP-dependent helicase BRM 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498955.1_7908 KAA8498955 SWI/SNF chromatin-remodeling complex subunit snf22 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003873 6-phosphofructo-2-kinase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004721 phosphoprotein phosphatase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005244 voltage-gated ion channel activity IEP Enrichment
MF GO:0005247 voltage-gated chloride channel activity IEP Enrichment
MF GO:0005253 anion channel activity IEP Enrichment
MF GO:0005254 chloride channel activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0005996 monosaccharide metabolic process IEP Enrichment
BP GO:0006000 fructose metabolic process IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
BP GO:0006821 chloride transport IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008308 voltage-gated anion channel activity IEP Enrichment
MF GO:0008443 phosphofructokinase activity IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016311 dephosphorylation IEP Enrichment
MF GO:0019200 carbohydrate kinase activity IEP Enrichment
BP GO:0019318 hexose metabolic process IEP Enrichment
MF GO:0022832 voltage-gated channel activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
InterPro domains Description Start Stop
IPR000330 SNF2_N 181 464
IPR001650 Helicase_C 486 599
No external refs found!