Sro85_g045500.1 (Contig4580.g34227)

Aliases : Contig4580.g34227

Description : (E3-independent) E2 ubiquitin-conjugating enzyme

Gene families : OG_01_0000550 (OrthoFinder) Phylogenetic Tree(s): OG0000550_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: Sro85_g045500.1
Cluster HCCA: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000053.13 tig00000053_g23496.t1 Probable ubiquitin-conjugating enzyme E2 23... 0.01 OrthoFinder
Cre08.g383702 30773398 Putative ubiquitin-conjugating enzyme E2 39... 0.02 OrthoFinder
Cre12.g510300 30793496 Probable ubiquitin-conjugating enzyme E2 25... 0.03 OrthoFinder
Cz04g39030.t1 No alias Ubiquitin-conjugating enzyme E2 [Interproscan]. 0.01 OrthoFinder
Dusal.0029s00008.1 33203764 Ubiquitin conjugation factor E4, core [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000024.1_cds_PRW20413.1_5626 PRW20413 Ubiquitin conjugating enzyme family 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEA Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Enrichment
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
CC GO:0071203 WASH complex IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
InterPro domains Description Start Stop
IPR000608 UBQ-conjugat_E2 1553 1663
IPR019474 Ub_conjug_fac_E4_core 666 952
No external refs found!