1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro83_g044320.1

Sro83_g044320.1 (Contig4450.g33406)


Aliases : Contig4450.g33406

Description : Lactococcin transport/processing ATP-binding protein LcnC-like


Gene families : OG_01_0000036 (OrthoFinder) Phylogenetic Tree(s): OG0000036_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro83_g044320.1
Cluster HCCA: Cluster_282

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000403.92 tig00000403_g352.t1 ABC transporter B family member 25 OS=Oryza sativa... 0.02 OrthoFinder
Dusal.1005s00005.1 33195266 ABC transporter-like; ABC transporter type 1,... 0.01 OrthoFinder
EOD22725 No alias Putative ABC transporter [Ensembl]. 0.02 OrthoFinder
OT_07G03200.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
Transcript_contig_54412 54412 ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
Vocar.0032s0010.1 32893720 ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
XM_003057414.1 MicpuC2_15544, 15544 ATP-binding cassette superfamily 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0008417 fucosyltransferase activity IEP Enrichment
BP GO:0010033 response to organic substance IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
BP GO:0019236 response to pheromone IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
BP GO:0042221 response to chemical IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0052689 carboxylic ester hydrolase activity IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0070569 uridylyltransferase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 648 797
IPR011527 ABC1_TM_dom 300 551
No external refs found!