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  5. Sro795_g203520.1

Sro795_g203520.1 (Contig372.g5045)


Aliases : Contig372.g5045

Description : DNA repair and recombination protein RAD54-like (Fragment)


Gene families : OG_01_0000285 (OrthoFinder) Phylogenetic Tree(s): OG0000285_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro795_g203520.1
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020556.80 tig00020556_g11046.t1 Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cpa|evm.model.tig00020614.39 tig00020614_g12152.t1 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder
Cpa|evm.model.tig00021760.3 tig00021760_g23432.t1 Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz11g25260.t1 No alias SNF2-related, N-terminal domain; Helicase, C-terminal... 0.01 OrthoFinder
EOD06519 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
EOD16796 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
EOD21201 No alias SNF2-related, N-terminal domain [Interproscan]. 0.04 OrthoFinder
EOD37408 No alias SNF2-related, N-terminal domain [Interproscan]. 0.04 OrthoFinder
EOD38972 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
OT_08G04010.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
OT_09G01280.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
PTI_14G01170.1 No alias Helicase, C-terminal; Bromodomain; SNF2-related,... 0.05 OrthoFinder
Sro368_g128060.1 Contig2761.g22245 ISWI chromatin-remodeling complex ATPase ISW2 0.02 OrthoFinder
XM_002499964.1 MICPUN_99013, 99013 SNF2 super family (RAD54B) 0.02 OrthoFinder
XM_002502147.1 MICPUN_58699, 58699 SNF2 super family 0.03 OrthoFinder
XM_002508265.1 MICPUN_60933, 60933 SNF2 super family (RAD54) 0.02 OrthoFinder
XM_003058958.1 MicpuC2_58384, 58384 SNF2 super family (RAD54) 0.02 OrthoFinder
lcl|BLLF01001512.1_cds_GFH19731.1_14208 HaLaN_16732, GFH19731 SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01002931.1_cds_GFH25830.1_20307 HaLaN_23862, GFH25830 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493509.1_4271 KAA8493509 DNA repair and recombination protein RAD54B 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR001487 Bromodomain 791 900
IPR001650 Helicase_C 595 697
IPR000330 SNF2_N 226 512
No external refs found!