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  5. Sro789_g202710.1

Sro789_g202710.1 (Contig1895.g16487)


Aliases : Contig1895.g16487

Description : Nucleolar GTP-binding protein 1


Gene families : OG_01_0000915 (OrthoFinder) Phylogenetic Tree(s): OG0000915_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro789_g202710.1
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021432.35 tig00021432_g21227.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder
Cz08g30260.t1 No alias NOG1, N-terminal helical domain [Interproscan]. 0.02 OrthoFinder
Cz08g30270.t1 No alias NOG, C-terminal; Nucleolar GTP-binding protein 1,... 0.1 OrthoFinder
Cz08g30280.t1 No alias Hypothetical protein 0.05 OrthoFinder
Dusal.0002s00037.1 33187953 NOG1, N-terminal helical domain; Nucleolar GTP-binding... 0.02 OrthoFinder
Dusal.0556s00014.1 33195349 NOG1, N-terminal helical domain; Nucleolar GTP-binding... 0.02 OrthoFinder
Dusal.0556s00015.1 33195341 NOG, C-terminal [Interproscan]. 0.02 OrthoFinder
EOD04385 No alias NOG, C-terminal; NOG1, N-terminal helical domain;... 0.03 OrthoFinder
OT_01G02430.1 No alias FeoB-type guanine nucleotide-binding (G) domain; NOG1,... 0.01 OrthoFinder
OT_02G03790.1 No alias NOG1, N-terminal helical domain; NOG, C-terminal;... 0.19 OrthoFinder
PTI_22G01420.1 No alias Nucleolar GTP-binding protein 1, Rossman-fold domain;... 0.31 OrthoFinder
TP01G10380.1 No alias Nucleolar GTP-binding protein 1, Rossman-fold domain;... 0.1 OrthoFinder
TP03G08460.1 No alias Nucleolar GTP-binding protein 1, Rossman-fold domain;... 0.22 OrthoFinder
Transcript_contig_56581 56581 NOG, C-terminal; NOG1, N-terminal helical domain;... 0.05 OrthoFinder
Vocar.0008s0106.1 32897063 Nucleolar GTP-binding protein 1, Rossman-fold domain... 0.03 OrthoFinder
XM_002502367.1 MICPUN_75968, 75968 NOG1, N-terminal helical domain; Nucleolar GTP-binding... 0.06 OrthoFinder
XM_002503141.1 MICPUN_83165, 83165 NOG, C-terminal; Nucleolar GTP-binding protein 1,... 0.17 OrthoFinder
XM_003061158.1 MicpuC2_28298, 28298 Nucleolar GTP-binding protein 1, Rossman-fold domain;... 0.12 OrthoFinder
lcl|BLLF01001181.1_cds_GFH17648.1_12125 HaLaN_14326, GFH17648 Putative nucleolar GTP-binding protein 1 0.04 OrthoFinder
lcl|BLLF01001454.1_cds_GFH19387.1_13864 HaLaN_16328, GFH19387 Nucleolar GTP-binding protein 1 0.02 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33235.1_3637 PRW33235 Nucleolar GTP-binding isoform B 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498097.1_7050 KAA8498097 Nucleolar GTP-binding protein 1 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR010674 NOG1_Rossman_fold_dom 235 292
IPR012973 NOG_C 425 478
IPR041623 NOG1_N 6 165
No external refs found!