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  5. Sro757_g197930.1

Sro757_g197930.1 (Contig322.g4282)


Aliases : Contig322.g4282

Description : RNA-associated protein 6 homolog


Gene families : OG_01_0002785 (OrthoFinder) Phylogenetic Tree(s): OG0002785_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro757_g197930.1
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000571.29 tig00000571_g2183.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 OrthoFinder
Cre10.g442000 30790656 Protein biosynthesis.cytosolic ribosome.small subunit... 0.2 OrthoFinder
Cz03g13170.t1 No alias U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.11 OrthoFinder
Dusal.0174s00015.1 33196283 U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.05 OrthoFinder
EOD04628 No alias U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.12 OrthoFinder
EOD34666 No alias U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.02 OrthoFinder
OT_02G00930.1 No alias U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.01 OrthoFinder
PTI_08G02440.1 No alias U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.35 OrthoFinder
TP16G00520.1 No alias U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.13 OrthoFinder
Transcript_contig_66361 66361 U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.06 OrthoFinder
Vocar.0001s1250.1 32884322 U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01002031.1_cds_GFH22397.1_16874 HaLaN_19857, GFH22397 U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01005177.1_cds_GFH30837.1_25314 HaLaN_29763, GFH30837 Hypothetical protein 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57423.1_9057 PRW57423 U3 small nucleolar RNA-associated 6-like protein 0.23 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499489.1_8442 KAA8499489 U3 small nucleolar RNA-associated protein 6 0.07 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA Interproscan
MF GO:0030515 snoRNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR013949 Utp6 9 81
No external refs found!