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  5. Cpa|evm.model.tig00000237.11

Cpa|evm.model.tig00000237.11 (tig00000237_g20460.t1)


Aliases : tig00000237_g20460.t1

Description : Dynein assembly factor with WDR repeat domains 1 OS=Chlamydomonas reinhardtii


Gene families : OG_01_0001154 (OrthoFinder) Phylogenetic Tree(s): OG0001154_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000237.11
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre12.g487200 30793448 Dynein assembly factor with WDR repeat domains 1... 0.03 OrthoFinder
Cz02g17240.t1 No alias WD40 repeat [Interproscan]. 0.02 OrthoFinder
Dusal.2803s00002.1 33203290 WD40 repeat [Interproscan]. 0.02 OrthoFinder
Dusal.3080s00001.1 33198615 WD40 repeat [Interproscan]. 0.01 OrthoFinder
EOD28621 No alias WD40 repeat [Interproscan]. 0.03 OrthoFinder
EOD37388 No alias WD40 repeat [Interproscan]. 0.03 OrthoFinder
OT_03G04500.1 No alias WD40 repeat [Interproscan]. 0.03 OrthoFinder
TP13G03090.1 No alias WD40 repeat [Interproscan]. 0.04 OrthoFinder
XM_002505986.1 MICPUN_95929, 95929 WD40 repeat [Interproscan]. 0.08 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56720.1_9890 PRW56720 Angio-associated migratory cell 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0000959 mitochondrial RNA metabolic process IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP Enrichment
MF GO:0004512 inositol-3-phosphate synthase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
BP GO:0006020 inositol metabolic process IEP Enrichment
BP GO:0006021 inositol biosynthetic process IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0019751 polyol metabolic process IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
BP GO:0046173 polyol biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 247 279
IPR001680 WD40_repeat 291 322
IPR001680 WD40_repeat 326 362
IPR001680 WD40_repeat 97 127
IPR001680 WD40_repeat 193 218
No external refs found!