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  5. Sro60_g034620.1

Sro60_g034620.1 (Contig797.g8939)


Aliases : Contig797.g8939

Description : Chloroplastic


Gene families : OG_01_0000076 (OrthoFinder) Phylogenetic Tree(s): OG0000076_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro60_g034620.1
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Cre08.g365900 30773702, LHCSR1 Photosynthesis.photophosphorylation.photosystem... 0.05 OrthoFinder
Cz16g02040.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
EOD03771 No alias Light-harvesting family [Ensembl]. 0.03 OrthoFinder
EOD03774 No alias Light-harvesting family [Ensembl]. 0.02 OrthoFinder
EOD06468 No alias Light harvesting protein [Ensembl]. 0.03 OrthoFinder
EOD08607 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
EOD09836 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
EOD15375 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
EOD20807 No alias Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
EOD20809 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
EOD25053 No alias Light-harvesting family [Ensembl]. 0.02 OrthoFinder
EOD35878 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
PTI_01G10030.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.06 OrthoFinder
PTI_02G03310.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
PTI_05G00320.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
PTI_07G04400.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
PTI_14G03460.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
TP05G03540.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.01 OrthoFinder
TP05G05630.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
TP08G04750.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
TP09G03710.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.01 OrthoFinder
TP18G01450.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.01 OrthoFinder
TP19G02190.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
TP23G01260.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
TP23G01270.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
TP23G01280.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
XM_002506509.1 MICPUN_105009, 105009 Chlorophyll a/b-binding protein (LI818R) 0.02 OrthoFinder
lcl|BLLF01002748.1_cds_GFH25200.1_19677 HaLaN_23126, GFH25200 Chlorophyll a-b binding protein, chloroplastic 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 241 394
No external refs found!