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  5. Sro589_g171830.1

Sro589_g171830.1 (Contig2898.g23120)


Aliases : Contig2898.g23120

Description : Arginine--tRNA ligase


Gene families : OG_01_0000600 (OrthoFinder) Phylogenetic Tree(s): OG0000600_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro589_g171830.1
Cluster HCCA: Cluster_206

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000711.7 tig00000711_g3368.t1 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.05 OrthoFinder
Cre03.g143887 30787653 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.14 OrthoFinder
Cz04g31040.t1 No alias DALR anticodon binding; Arginyl-tRNA synthetase,... 0.02 OrthoFinder
Cz04g31060.t1 No alias Arginyl tRNA synthetase N-terminal domain; Arginyl-tRNA... 0.04 OrthoFinder
EOD23606 No alias Arginyl-tRNA synthetase, catalytic core domain; Arginyl... 0.02 OrthoFinder
EOD28167 No alias Arginine-tRNA ligase [Ensembl]. 0.03 OrthoFinder
EOD28352 No alias Arginine-tRNA ligase [Ensembl]. 0.04 OrthoFinder
PTI_00G03620.1 No alias Arginyl-tRNA synthetase, catalytic core domain; Arginyl... 0.07 OrthoFinder
TP03G07150.1 No alias Arginyl-tRNA synthetase, catalytic core domain; DALR... 0.02 OrthoFinder
TP13G01500.1 No alias DALR anticodon binding; Arginyl-tRNA synthetase,... 0.02 OrthoFinder
Transcript_contig_53953 53953 Arginyl-tRNA synthetase, catalytic core domain; DALR... 0.01 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494154.1_4018 KAA8494154 Arginine--tRNA ligase 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004814 arginine-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
BP GO:0006420 arginyl-tRNA aminoacylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0004107 chorismate synthase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
MF GO:0031369 translation initiation factor binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043461 proton-transporting ATP synthase complex assembly IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1901607 alpha-amino acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR005148 Arg-tRNA-synth_N 305 394
IPR035684 ArgRS_core 422 760
IPR008909 DALR_anticod-bd 774 893
No external refs found!