Sro566_g167850.1 (Contig3739.g28680)

Aliases : Contig3739.g28680

Description : ISWI chromatin-remodeling complex ATPase ISW2

Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sro566_g167850.1
Cluster	HCCA: Cluster_164

Target	Alias	Description	ECC score	Gene Family Method
Cre03.g158550	30787160	CHD3-type chromatin-remodeling factor PICKLE...	0.03	OrthoFinder
Cre03.g179300	30786668	RNA biosynthesis.RNA polymerase II-dependent...	0.02	OrthoFinder
Cre09.g390000	30781417	RNA biosynthesis.transcriptional activation.PHD finger...	0.02	OrthoFinder
Cz05g37180.t1	No alias	SNF2-related, N-terminal domain; Helicase, C-terminal...	0.02	OrthoFinder
Cz19g07040.t1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain;...	0.03	OrthoFinder
EOD17057	No alias	Chromodomain helicase DNA binding protein [Ensembl].	0.03	OrthoFinder
EOD23118	No alias	SNF2-related, N-terminal domain [Interproscan].	0.02	OrthoFinder
EOD25651	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.07	OrthoFinder
EOD28310	No alias	Chromodomain helicase DNA binding protein [Ensembl].	0.03	OrthoFinder
EOD36557	No alias	SNF2-related, N-terminal domain [Interproscan].	0.03	OrthoFinder
EOD38452	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.03	OrthoFinder
EOD41956	No alias	Chromo domain; Helicase, C-terminal; SNF2-related,...	0.02	OrthoFinder
OT_07G04020.1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.01	OrthoFinder
OT_11G00460.1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain;...	0.02	OrthoFinder
PTI_02G06230.1	No alias	Bromodomain; Helicase, C-terminal; Snf2, ATP coupling...	0.03	OrthoFinder
PTI_04G04910.1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.05	OrthoFinder
PTI_05G01880.1	No alias	High mobility group box domain; Helicase, C-terminal;...	0.06	OrthoFinder
PTI_10G00070.1	No alias	Helicase, C-terminal; High mobility group box domain;...	0.06	OrthoFinder
PTI_10G02350.1	No alias	Chromo domain; SNF2-related, N-terminal domain [Interproscan].	0.05	OrthoFinder
PTI_12G00850.1	No alias	Helicase, C-terminal; High mobility group box domain;...	0.03	OrthoFinder
PTI_24G01280.1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.11	OrthoFinder
TP12G03300.1	No alias	SNF2-related, N-terminal domain; Chromo domain;...	0.03	OrthoFinder
Transcript_contig_67500	67500	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.01	OrthoFinder
XM_002507782.1	MICPUN_60518, 60518	SNF2 super family	0.02	OrthoFinder
XM_002508085.1	MICPUN_60550, 60550	SNF2 super family	0.03	OrthoFinder
XM_003061151.1	MicpuC2_60694, 60694	SNF2 super family	0.02	OrthoFinder
lcl\|BLLF01000629.1_cds_GFH13582.1_8059	HaLaN_09500, GFH13582	Helicase, C-terminal [Interproscan].	0.01	OrthoFinder
lcl\|BLLF01001410.1_cds_GFH19126.1_13603	HaLaN_16027, GFH19126	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.01	OrthoFinder
lcl\|LHPG02000001.1_cds_PRW61596.1_539	PRW61596	CHD3-type chromatin-remodeling factor PICKLE	0.02	OrthoFinder
lcl\|LHPG02000002.1_cds_PRW60614.1_4411	PRW60614	ATP-dependent helicase BRM	0.02	OrthoFinder
lcl\|LHPG02000006.1_cds_PRW57711.1_8458	PRW57711	CHROMATIN REMODELING 5 isoform A	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Enrichment
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEP	Enrichment
MF	GO:0003980	UDP-glucose:glycoprotein glucosyltransferase activity	IEP	Enrichment
MF	GO:0004427	inorganic diphosphatase activity	IEP	Enrichment
MF	GO:0004779	sulfate adenylyltransferase activity	IEP	Enrichment
MF	GO:0004781	sulfate adenylyltransferase (ATP) activity	IEP	Enrichment
MF	GO:0004843	thiol-dependent deubiquitinase	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
CC	GO:0005643	nuclear pore	IEP	Enrichment
BP	GO:0006464	cellular protein modification process	IEP	Enrichment
BP	GO:0006644	phospholipid metabolic process	IEP	Enrichment
BP	GO:0006650	glycerophospholipid metabolic process	IEP	Enrichment
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Enrichment
MF	GO:0008234	cysteine-type peptidase activity	IEP	Enrichment
MF	GO:0008242	omega peptidase activity	IEP	Enrichment
MF	GO:0008270	zinc ion binding	IEP	Enrichment
MF	GO:0016307	phosphatidylinositol phosphate kinase activity	IEP	Enrichment
BP	GO:0016579	protein deubiquitination	IEP	Enrichment
MF	GO:0016740	transferase activity	IEP	Enrichment
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Enrichment
MF	GO:0016779	nucleotidyltransferase activity	IEP	Enrichment
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	Enrichment
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Enrichment
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Enrichment
BP	GO:0036211	protein modification process	IEP	Enrichment
MF	GO:0043169	cation binding	IEP	Enrichment
BP	GO:0043412	macromolecule modification	IEP	Enrichment
BP	GO:0044267	cellular protein metabolic process	IEP	Enrichment
BP	GO:0046486	glycerolipid metabolic process	IEP	Enrichment
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	Enrichment
MF	GO:0046527	glucosyltransferase activity	IEP	Enrichment
MF	GO:0046872	metal ion binding	IEP	Enrichment
BP	GO:0051726	regulation of cell cycle	IEP	Enrichment
MF	GO:0070566	adenylyltransferase activity	IEP	Enrichment
BP	GO:0070646	protein modification by small protein removal	IEP	Enrichment
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Enrichment
MF	GO:0097747	RNA polymerase activity	IEP	Enrichment
MF	GO:0101005	deubiquitinase activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	264	573
IPR001650	Helicase_C	595	708
IPR009071	HMG_box_dom	5	70
IPR015195	SLIDE	1003	1111

External Links

No external refs found!

Sro566_g167850.1 (Contig3739.g28680)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation