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  5. Sro548_g164410.1

Sro548_g164410.1 (Contig1714.g15321)


Aliases : Contig1714.g15321

Description : Rhomboid family


Gene families : OG_01_0005481 (OrthoFinder) Phylogenetic Tree(s): OG0005481_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro548_g164410.1
Cluster HCCA: Cluster_301

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_58428 58428 Peptidase S54, rhomboid domain [Interproscan]. 0.01 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8490953.1_6156 KAA8490953 Presenilins-associated rhomboid-like protein, mitochondrial 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008374 O-acyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0019239 deaminase activity IEP Enrichment
BP GO:0019751 polyol metabolic process IEP Enrichment
BP GO:0032958 inositol phosphate biosynthetic process IEP Enrichment
BP GO:0043647 inositol phosphate metabolic process IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
BP GO:0046173 polyol biosynthetic process IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR022764 Peptidase_S54_rhomboid_dom 200 352
No external refs found!