Sro544_g163690.1 (Contig3214.g25423)

Aliases : Contig3214.g25423

Description : DNA-directed RNA polymerase subunit beta' (Fragment)

Gene families : OG_01_0000697 (OrthoFinder) Phylogenetic Tree(s): OG0000697_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sro544_g163690.1
Cluster	HCCA: Cluster_273

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000241.15	tig00000241_g20874.t1	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.01	OrthoFinder
Cre03.g165750	30786879	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	OrthoFinder
Cz01g33020.t1	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase, alpha...	0.02	OrthoFinder
Dusal.0157s00011.1	33200035	RNA polymerase Rpb1, domain 1; RNA polymerase, alpha...	0.02	OrthoFinder
EOD21342	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,...	0.01	OrthoFinder
OT_10G01340.1	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,...	0.03	OrthoFinder
TP06G07080.1	No alias	RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1,...	0.04	OrthoFinder
XM_002503483.1	MICPUN_94662, 94662	RNA polymerase Rpb1, domain 6; RNA polymerase Rpb1,...	0.03	OrthoFinder
XM_003055558.1	MicpuC2_45178, 45178	RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,...	0.01	OrthoFinder
lcl\|BLLF01000232.1_cds_GFH09408.1_3885	HaLaN_04538, GFH09408	DNA-directed RNA polymerase subunit	0.01	OrthoFinder
lcl\|LHPG02000007.1_cds_PRW57000.1_9043	PRW57000	DNA-directed RNA polymerase II subunit 1	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006366	transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003924	GTPase activity	IEP	Enrichment
MF	GO:0003950	NAD+ ADP-ribosyltransferase activity	IEP	Enrichment
MF	GO:0004540	ribonuclease activity	IEP	Enrichment
MF	GO:0004672	protein kinase activity	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
MF	GO:0005524	ATP binding	IEP	Enrichment
MF	GO:0005525	GTP binding	IEP	Enrichment
BP	GO:0006468	protein phosphorylation	IEP	Enrichment
MF	GO:0016301	kinase activity	IEP	Enrichment
BP	GO:0016310	phosphorylation	IEP	Enrichment
MF	GO:0016462	pyrophosphatase activity	IEP	Enrichment
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Enrichment
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Enrichment
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Enrichment
MF	GO:0017076	purine nucleotide binding	IEP	Enrichment
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Enrichment
MF	GO:0019001	guanyl nucleotide binding	IEP	Enrichment
MF	GO:0030554	adenyl nucleotide binding	IEP	Enrichment
MF	GO:0032553	ribonucleotide binding	IEP	Enrichment
MF	GO:0032555	purine ribonucleotide binding	IEP	Enrichment
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Enrichment
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Enrichment
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Enrichment
MF	GO:0036094	small molecule binding	IEP	Enrichment
MF	GO:0043167	ion binding	IEP	Enrichment
MF	GO:0043168	anion binding	IEP	Enrichment
BP	GO:0051259	protein complex oligomerization	IEP	Enrichment
BP	GO:0051260	protein homooligomerization	IEP	Enrichment
MF	GO:0070403	NAD+ binding	IEP	Enrichment
MF	GO:0097367	carbohydrate derivative binding	IEP	Enrichment
MF	GO:1901265	nucleoside phosphate binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR007066	RNA_pol_Rpb1_3	509	671
IPR007073	RNA_pol_Rpb1_7	1155	1313
IPR007075	RNA_pol_Rpb1_6	876	1069
IPR000722	RNA_pol_asu	340	503
IPR007080	RNA_pol_Rpb1_1	25	338
IPR000684	RNA_pol_II_repeat_euk	1634	1647
IPR000684	RNA_pol_II_repeat_euk	1697	1710
IPR000684	RNA_pol_II_repeat_euk	1620	1633
IPR000684	RNA_pol_II_repeat_euk	1739	1752
IPR000684	RNA_pol_II_repeat_euk	1711	1724
IPR000684	RNA_pol_II_repeat_euk	1732	1745
IPR000684	RNA_pol_II_repeat_euk	1683	1696
IPR000684	RNA_pol_II_repeat_euk	1606	1619
IPR000684	RNA_pol_II_repeat_euk	1704	1717
IPR000684	RNA_pol_II_repeat_euk	1613	1626
IPR000684	RNA_pol_II_repeat_euk	1718	1731
IPR000684	RNA_pol_II_repeat_euk	1599	1612
IPR000684	RNA_pol_II_repeat_euk	1725	1738
IPR000684	RNA_pol_II_repeat_euk	1641	1654
IPR000684	RNA_pol_II_repeat_euk	1690	1703
IPR000684	RNA_pol_II_repeat_euk	1627	1640
IPR000684	RNA_pol_II_repeat_euk	1655	1668
IPR000684	RNA_pol_II_repeat_euk	1648	1661
IPR000684	RNA_pol_II_repeat_euk	1588	1598
IPR000684	RNA_pol_II_repeat_euk	1669	1682
IPR000684	RNA_pol_II_repeat_euk	1676	1689
IPR000684	RNA_pol_II_repeat_euk	1662	1675
IPR000684	RNA_pol_II_repeat_euk	1592	1605
IPR000684	RNA_pol_II_repeat_euk	1746	1759
IPR007083	RNA_pol_Rpb1_4	702	803
IPR007081	RNA_pol_Rpb1_5	810	1434

External Links

No external refs found!

Sro544_g163690.1 (Contig3214.g25423)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation