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  5. Sro51_chlor_g030150.1

Sro51_chlor_g030150.1 (RpoC1)


Aliases : RpoC1

Description : RpoC1


Gene families : OG_01_0001998 (OrthoFinder) Phylogenetic Tree(s): OG0001998_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro51_chlor_g030150.1

Target Alias Description ECC score Gene Family Method Actions
CzCPg00110.t1 No alias RNA polymerase Rpb2, domain 7; DNA-directed RNA... 0.13 OrthoFinder
CzCPg00120.t1 No alias RNA polymerase Rpb2, domain 3; DNA-directed RNA... 0.13 OrthoFinder
CzCPg01240.t1 No alias RNA polymerase Rpb1, domain 1; RNA polymerase, alpha... 0.09 OrthoFinder
SymbC1.scaffold940.59 940.59 RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.01 OrthoFinder
TPCG00730.1 No alias RNA polymerase, alpha subunit; RNA polymerase Rpb1,... 0.02 OrthoFinder
TPCG00740.1 No alias RNA polymerase Rpb2, domain 7; RNA polymerase, beta... 0.03 OrthoFinder
Transcript_contig_42167 42167 RNA polymerase Rpb2, domain 3 [Interproscan]. 0.05 OrthoFinder
Transcript_contig_58634 58634 RNA polymerase Rpb2, domain 2 [Interproscan]. 0.05 OrthoFinder
Transcript_contig_65526 65526 DNA-directed RNA polymerase, subunit 2, hybrid-binding... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
CC GO:0009512 cytochrome b6f complex IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
CC GO:0070069 cytochrome complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR007080 RNA_pol_Rpb1_1 6 119
No external refs found!