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  5. Sro50_g029020.1

Sro50_g029020.1 (Contig297.g3890)


Aliases : Contig297.g3890

Description : Deoxyribodipyrimidine photo-lyase


Gene families : OG_01_0000241 (OrthoFinder) Phylogenetic Tree(s): OG0000241_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro50_g029020.1
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020952.42 tig00020952_g16499.t1 DNA damage response.DNA repair... 0.02 OrthoFinder
Cpa|evm.model.tig00020952.44 tig00020952_g16502.t1 DNA damage response.DNA repair... 0.05 OrthoFinder
Cz05g06040.t1 No alias DNA photolyase, N-terminal [Interproscan]. 0.01 OrthoFinder
Dusal.0061s00008.1 33190659 DNA photolyase, N-terminal [Interproscan]. 0.02 OrthoFinder
EOD11422 No alias DNA photolyase, N-terminal [Interproscan]. 0.03 OrthoFinder
EOD17389 No alias DNA photolyase, N-terminal [Interproscan]. 0.06 OrthoFinder
OT_03G05680.1 No alias DNA photolyase, N-terminal [Interproscan]. 0.04 OrthoFinder
TP06G02690.1 No alias DNA photolyase, N-terminal [Interproscan]. 0.02 OrthoFinder
XM_002502862.1 MICPUN_67761, 67761 DNA photolyase 0.03 OrthoFinder
XM_003060976.1 MicpuC2_10493, 10493 DNA photolyase, N-terminal [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01001490.1_cds_GFH19611.1_14088 HaLaN_16580, GFH19611 Photolyase/cryptochrome alpha/beta domain-containing protein 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497829.1_6782 KAA8497829 Casein kinase II subunit alpha 0.02 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493818.1_4580 KAA8493818 Deoxyribodipyrimidine photo-lyase 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
CC GO:0005886 plasma membrane IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment

No InterPro domains available for this sequence

No external refs found!