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  5. Sro508_g156640.1

Sro508_g156640.1 (Contig2824.g22619)


Aliases : Contig2824.g22619

Description : Hybrid signal transduction histidine kinase K


Gene families : OG_01_0000006 (OrthoFinder) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro508_g156640.1
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000042.236 tig00000042_g15634.t1 Probable histidine kinase 3 OS=Oryza sativa subsp. indica 0.01 OrthoFinder
Cpa|evm.model.tig00000190.17 tig00000190_g13838.t1 Probable histidine kinase 3 OS=Oryza sativa subsp. indica 0.02 OrthoFinder
Cpa|evm.model.tig00000254.26 tig00000254_g22474.t1 Ethylene receptor 1 OS=Brassica oleracea 0.02 OrthoFinder
Cpa|evm.model.tig00020660.47 tig00020660_g12551.t1 UDP-xylose transporter 1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00020710.84 tig00020710_g13337.t1 Probable histidine kinase 4 OS=Oryza sativa subsp. japonica 0.01 OrthoFinder
Cpa|evm.model.tig00021682.12 tig00021682_g23102.t1 No description available 0.02 OrthoFinder
Dusal.0607s00010.1 33187794 Signal transduction response regulator, receiver domain... 0.01 OrthoFinder
Sro1435_g272380.1 Contig4058.g31114 Hybrid signal transduction histidine kinase J 0.03 OrthoFinder
Sro1466_g275080.1 Contig2211.g18351 Peroxide stress-activated histidine kinase mak2 0.04 OrthoFinder
Sro14_g010640.1 Contig1128.g10813 Respiration control sensor protein ArcB 0.05 OrthoFinder
Sro156_g070980.1 Contig473.g6436 Sensor protein kinase WalK (Fragment) 0.03 OrthoFinder
Sro164_g073700.1 Contig4339.g32744 Peroxide stress-activated histidine kinase mak2 0.04 OrthoFinder
Sro20_g014160.1 Contig2954.g23446 Peroxide stress-activated histidine kinase mak2 0.02 OrthoFinder
Sro28_g018500.1 Contig404.g5459 Sensor protein kinase WalK (Fragment) 0.04 OrthoFinder
Sro325_g117780.1 Contig3568.g27567 Respiration control sensor protein ArcB 0.03 OrthoFinder
Sro369_g128120.1 Contig1690.g15135 Hybrid signal transduction histidine kinase J 0.03 OrthoFinder
Sro507_g156480.1 Contig4452.g33450 Hybrid signal transduction histidine kinase K 0.05 OrthoFinder
Sro548_g164350.1 Contig1714.g15315 Sensor protein kinase WalK (Fragment) 0.03 OrthoFinder
Sro636_g179300.1 Contig84.g907 Sensor kinase/phosphatase LuxQ 0.03 OrthoFinder
TP03G08180.1 No alias Signal transduction response regulator, receiver domain... 0.02 OrthoFinder
Transcript_contig_89432 89432 Archaeal/bacterial/fungal rhodopsins; Histidine... 0.02 OrthoFinder
Vocar.0009s0380.1 32893358 Histidine kinase/HSP90-like ATPase; Adenylyl cyclase... 0.01 OrthoFinder
XM_002503097.1 MICPUN_74145, 74145 Signal transduction response regulator, receiver domain... 0.02 OrthoFinder
XM_003057224.1 MicpuC2_8975, 8975 Signal transduction response regulator, receiver domain... 0.02 OrthoFinder
XM_003057225.1 MicpuC2_10763, 10763 Signal transduction histidine kinase,... 0.02 OrthoFinder
XM_003060856.1 MicpuC2_20059, 20059 Signal transduction response regulator, receiver domain... 0.01 OrthoFinder
lcl|BLLF01000478.1_cds_GFH12211.1_6688 HaLaN_07851, GFH12211 Signal transduction histidine kinase,... 0.02 OrthoFinder
lcl|BLLF01000561.1_cds_GFH12981.1_7458 HaLaN_08775, GFH12981 Signal transduction histidine kinase,... 0.01 OrthoFinder
lcl|BLLF01001045.1_cds_GFH16747.1_11224 HaLaN_13231, GFH16747 Signal transduction response regulator, receiver domain... 0.01 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58431.1_8010 PRW58431 LOV domain-containing 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEA Interproscan
BP GO:0000160 phosphorelay signal transduction system IEA Interproscan
BP GO:0007165 signal transduction IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR003661 HisK_dim/P 403 460
IPR001789 Sig_transdc_resp-reg_receiver 699 810
IPR003594 HATPase_C 516 665
No external refs found!