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  5. Sro459_g147320.1

Sro459_g147320.1 (Contig4657.g34672)


Aliases : Contig4657.g34672

Description : U box domain [Interproscan].


Gene families : OG_01_0000179 (OrthoFinder) Phylogenetic Tree(s): OG0000179_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro459_g147320.1
Cluster HCCA: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
Sro1011_g230970.1 Contig997.g10070 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro1011_g231050.1 Contig997.g10078 SAM and U-box domain-containing protein 1 0.05 OrthoFinder
Sro1154_g247120.1 Contig2345.g19268 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro1227_g254310.1 Contig334.g4443 U-box domain-containing protein 0.03 OrthoFinder
Sro1531_g280130.1 Contig2576.g20919 U box domain [Interproscan]. 0.03 OrthoFinder
Sro1588_g284330.1 Contig4233.g32103 Sel1 domain protein repeat-containing protein 0.04 OrthoFinder
Sro214_g088890.1 Contig282.g3674 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro256_g100570.1 Contig3587.g27702 Hypothetical protein 0.03 OrthoFinder
Sro25_g017160.1 Contig1417.g13055 U box domain [Interproscan]. 0.03 OrthoFinder
Sro2646_g333590.1 Contig1915.g16544 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro361_g126480.1 Contig1094.g10573 SAM and U-box domain-containing protein 1 0.03 OrthoFinder
Sro59_g034410.1 Contig571.g7287 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro639_g179810.1 Contig197.g2302 Sel1 domain protein repeat-containing protein 0.05 OrthoFinder
Sro793_g203260.1 Contig534.g6934 Sel1 domain protein repeat-containing protein 0.04 OrthoFinder
Sro820_g207210.1 Contig34.g203 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro897_g217530.1 Contig4351.g32806 U box domain [Interproscan]. 0.03 OrthoFinder
Sro963_g225240.1 Contig3377.g26425 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro963_g225290.2 No alias U box domain; Sel1-like repeat [Interproscan]. 0.03 OrthoFinder
Sro963_g225330.1 Contig3377.g26434 ERAD-associated E3 ubiquitin-protein ligase component 0.06 OrthoFinder
Sro983_g227810.1 Contig79.g820 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006979 response to oxidative stress IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0051259 protein complex oligomerization IEP Enrichment
BP GO:0051260 protein homooligomerization IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
InterPro domains Description Start Stop
IPR003613 Ubox_domain 60 128
No external refs found!