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  5. Sro457_g146880.1

Sro457_g146880.1 (Contig1832.g16117)


Aliases : Contig1832.g16117

Description : Farnesyltransferase subunit beta


Gene families : OG_01_0000594 (OrthoFinder) Phylogenetic Tree(s): OG0000594_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro457_g146880.1
Cluster HCCA: Cluster_255

Target Alias Description ECC score Gene Family Method Actions
Cz06g31160.t1 No alias PFTB repeat [Interproscan]. 0.02 OrthoFinder
Dusal.0256s00009.1 33203449 PFTB repeat [Interproscan]. 0.02 OrthoFinder
PTI_12G03910.1 No alias PFTB repeat [Interproscan]. 0.02 OrthoFinder
XM_003061594.1 MicpuC2_44694, 44694 PFTB repeat [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000105.1_cds_GFH07599.1_2076 HaLaN_02425, GFH07599 Protein farnesyltransferase subunit beta 0.01 OrthoFinder
lcl|BLLF01004187.1_cds_GFH29110.1_23587 HaLaN_27715, GFH29110 Geranylgeranyl transferase type-2 subunit beta 0.01 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496963.1_692 KAA8496963 Geranylgeranyl transferase type-2 subunit beta 1 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP Enrichment
BP GO:0000077 DNA damage checkpoint signaling IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
CC GO:0008290 F-actin capping protein complex IEP Enrichment
BP GO:0010564 regulation of cell cycle process IEP Enrichment
BP GO:0010639 negative regulation of organelle organization IEP Enrichment
BP GO:0010948 negative regulation of cell cycle process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
CC GO:0017119 Golgi transport complex IEP Enrichment
CC GO:0030008 TRAPP complex IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
BP GO:0030832 regulation of actin filament length IEP Enrichment
BP GO:0030833 regulation of actin filament polymerization IEP Enrichment
BP GO:0030834 regulation of actin filament depolymerization IEP Enrichment
BP GO:0030835 negative regulation of actin filament depolymerization IEP Enrichment
BP GO:0030837 negative regulation of actin filament polymerization IEP Enrichment
CC GO:0030896 checkpoint clamp complex IEP Enrichment
BP GO:0031333 negative regulation of protein-containing complex assembly IEP Enrichment
BP GO:0031570 DNA integrity checkpoint signaling IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0032271 regulation of protein polymerization IEP Enrichment
BP GO:0032272 negative regulation of protein polymerization IEP Enrichment
BP GO:0032535 regulation of cellular component size IEP Enrichment
BP GO:0032956 regulation of actin cytoskeleton organization IEP Enrichment
BP GO:0032970 regulation of actin filament-based process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0042770 signal transduction in response to DNA damage IEP Enrichment
BP GO:0043242 negative regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043254 regulation of protein-containing complex assembly IEP Enrichment
BP GO:0044087 regulation of cellular component biogenesis IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
BP GO:0045786 negative regulation of cell cycle IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0051016 barbed-end actin filament capping IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051129 negative regulation of cellular component organization IEP Enrichment
BP GO:0051493 regulation of cytoskeleton organization IEP Enrichment
BP GO:0051494 negative regulation of cytoskeleton organization IEP Enrichment
BP GO:0051693 actin filament capping IEP Enrichment
BP GO:0051726 regulation of cell cycle IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0090066 regulation of anatomical structure size IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
BP GO:0110053 regulation of actin filament organization IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
BP GO:1901879 regulation of protein depolymerization IEP Enrichment
BP GO:1901880 negative regulation of protein depolymerization IEP Enrichment
BP GO:1901987 regulation of cell cycle phase transition IEP Enrichment
BP GO:1901988 negative regulation of cell cycle phase transition IEP Enrichment
BP GO:1902903 regulation of supramolecular fiber organization IEP Enrichment
BP GO:1902904 negative regulation of supramolecular fiber organization IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001330 PFTB_repeat 348 391
IPR001330 PFTB_repeat 207 232
IPR001330 PFTB_repeat 256 285
IPR001330 PFTB_repeat 425 462
IPR001330 PFTB_repeat 306 340
No external refs found!