1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro435_g142400.1

Sro435_g142400.1 (Contig492.g6646)


Aliases : Contig492.g6646

Description : Polymerase alpha-associated DNA helicase A


Gene families : OG_01_0000385 (OrthoFinder) Phylogenetic Tree(s): OG0000385_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro435_g142400.1
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000852.42 tig00000852_g5051.t1 No description available 0.01 OrthoFinder
Cpa|evm.model.tig00000852.43 tig00000852_g5052.t1 No description available 0.01 OrthoFinder
EOD22149 No alias DNA2/NAM7 helicase-like, AAA domain [Interproscan]. 0.02 OrthoFinder
PTI_17G01530.1 No alias DNA2/NAM7 helicase, AAA domain; DNA2/NAM7 helicase-like,... 0.03 OrthoFinder
XM_002504308.1 MICPUN_61481, 61481 DNA2/NAM7 helicase-like, AAA domain; DNA2/NAM7 helicase,... 0.02 OrthoFinder
lcl|BLLF01001039.1_cds_GFH16702.1_11179 HaLaN_13178, GFH16702 AAA domain-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
BP GO:0031123 RNA 3'-end processing IEP Enrichment
BP GO:0031124 mRNA 3'-end processing IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
InterPro domains Description Start Stop
IPR041679 DNA2/NAM7-like_C 480 710
IPR041677 DNA2/NAM7_AAA_11 217 469
IPR001374 R3H_dom 792 849
No external refs found!