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  5. Sro345_g122580.1

Sro345_g122580.1 (Contig2266.g18817)


Aliases : Contig2266.g18817

Description : Ribosome biogenesis protein BOP1


Gene families : OG_01_0003084 (OrthoFinder) Phylogenetic Tree(s): OG0003084_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro345_g122580.1
Cluster HCCA: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000382.38 tig00000382_g24574.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder
Cre10.g417950 30790890 Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder
Cz12g21250.t1 No alias WD40 repeat; BOP1, N-terminal domain [Interproscan]. 0.03 OrthoFinder
Dusal.1024s00003.1 33196169 BOP1, N-terminal domain; WD40 repeat [Interproscan]. 0.02 OrthoFinder
Dusal.1024s00004.1 33196168 WD40 repeat [Interproscan]. 0.01 OrthoFinder
EOD13489 No alias WD40 repeat; BOP1, N-terminal domain [Interproscan]. 0.05 OrthoFinder
OT_02G00440.1 No alias BOP1, N-terminal domain [Interproscan]. 0.04 OrthoFinder
PTI_28G01560.1 No alias BOP1, N-terminal domain; WD40 repeat [Interproscan]. 0.06 OrthoFinder
TP23G00340.1 No alias WD40 repeat; BOP1, N-terminal domain [Interproscan]. 0.05 OrthoFinder
Transcript_contig_58163 58163 BOP1, N-terminal domain; WD40 repeat [Interproscan]. 0.03 OrthoFinder
Transcript_contig_82257 82257 WD40 repeat [Interproscan]. 0.03 OrthoFinder
Vocar.0025s0201.1 32898403 WD40 repeat; BOP1, N-terminal domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000633.1_cds_GFH13620.1_8097 HaLaN_09545, GFH13620 Ribosome biogenesis protein BOP1 homolog 0.06 OrthoFinder
lcl|BLLF01001331.1_cds_GFH18637.1_13114 HaLaN_15473, GFH18637 Ribosome biogenesis protein BOP1 homolog 0.04 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59011.1_7240 PRW59011 Ribosome biogenesis BOP1-like protein 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR012953 BOP1_N_dom 133 411
IPR001680 WD40_repeat 429 455
IPR001680 WD40_repeat 750 789
IPR001680 WD40_repeat 698 734
No external refs found!