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  5. Sro3407_g347670.1

Sro3407_g347670.1 (Contig1187.g11243)


Aliases : Contig1187.g11243

Description : Hypothetical protein


Gene families : OG_01_0004743 (OrthoFinder) Phylogenetic Tree(s): OG0004743_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro3407_g347670.1
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
Sro1084_g239500.1 Contig3162.g25057 Helicase PIF1 0.03 OrthoFinder
Sro1098_g240930.1 Contig3483.g27014 Pfam:DUF889 0.04 OrthoFinder
Sro1324_g262830.1 Contig3409.g26612 Helicase PIF1 0.05 OrthoFinder
Sro1439_g272800.1 Contig4742.g35148 Hypothetical protein 0.05 OrthoFinder
Sro1680_g290740.1 Contig1582.g14368 Hypothetical protein 0.03 OrthoFinder
Sro2102_g314660.1 Contig4016.g30898 Hypothetical protein 0.04 OrthoFinder
Sro3363_g347230.1 Contig2026.g17363 Helicase PIF1 0.03 OrthoFinder
Sro740_g195460.1 Contig168.g1885 Helicase PIF1 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment

No InterPro domains available for this sequence

No external refs found!