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  5. Sro29_g018990.1

Sro29_g018990.1 (Contig1384.g12742)


Aliases : Contig1384.g12742

Description : Pumilio homolog


Gene families : OG_01_0000430 (OrthoFinder) Phylogenetic Tree(s): OG0000430_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro29_g018990.1
Cluster HCCA: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
Cre12.g544700 30792000, PUF3 Pumilio homolog 12 OS=Arabidopsis thaliana 0.01 OrthoFinder
SymbC1.scaffold6228.1 6228.1 Pumilio RNA-binding repeat [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold6587.1 6587.1 Pumilio RNA-binding repeat [Interproscan]. 0.01 OrthoFinder
TP05G01840.1 No alias Pumilio RNA-binding repeat [Interproscan]. 0.02 OrthoFinder
TP13G00030.1 No alias Pumilio RNA-binding repeat [Interproscan]. 0.02 OrthoFinder
XM_002505262.1 MICPUN_86321, 86321 Pumilio RNA-binding repeat [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006810 transport IEP Enrichment
MF GO:0008519 ammonium transmembrane transporter activity IEP Enrichment
BP GO:0015696 ammonium transport IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 794 820
IPR001313 Pumilio_RNA-bd_rpt 741 763
IPR001313 Pumilio_RNA-bd_rpt 834 861
IPR001313 Pumilio_RNA-bd_rpt 630 662
IPR001313 Pumilio_RNA-bd_rpt 673 696
IPR001313 Pumilio_RNA-bd_rpt 867 895
IPR001313 Pumilio_RNA-bd_rpt 702 729
No external refs found!