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  5. Sro28_g018720.1

Sro28_g018720.1 (Contig404.g5481)


Aliases : Contig404.g5481

Description : Sensor protein FixL


Gene families : OG_01_0000027 (OrthoFinder) Phylogenetic Tree(s): OG0000027_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro28_g018720.1
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000025.37 tig00000025_g7945.t1 No description available 0.03 OrthoFinder
Cpa|evm.model.tig00000025.39 tig00000025_g7945.t1 No description available 0.02 OrthoFinder
Cpa|evm.model.tig00000441.4 tig00000441_g699.t1 No description available 0.06 OrthoFinder
Cpa|evm.model.tig00000711.10 tig00000711_g3371.t1 No description available 0.02 OrthoFinder
Cpa|evm.model.tig00001443.3 tig00001443_g8748.t1 No description available 0.03 OrthoFinder
Cpa|evm.model.tig00020902.30 tig00020902_g14981.t1 No description available 0.01 OrthoFinder
Cpa|evm.model.tig00021522.9 tig00021522_g22101.t1 No description available 0.02 OrthoFinder
Cre05.g233650 30783131, FXL9 No description available 0.02 OrthoFinder
Cre07.g319650 30775131, FXL4 No description available 0.02 OrthoFinder
Cre09.g397000 30780571 No description available 0.04 OrthoFinder
Cre09.g397050 30781546 No description available 0.03 OrthoFinder
Cre10.g427850 30790464 No description available 0.03 OrthoFinder
Cre10.g457331 30790915 No description available 0.05 OrthoFinder
Cre10.g457400 30790407 No description available 0.01 OrthoFinder
Cre13.g586700 30784046 No description available 0.03 OrthoFinder
Cre13.g587550 30783866 No description available 0.02 OrthoFinder
Cre17.g698903 30781618 No description available 0.04 OrthoFinder
Cz03g08250.t1 No alias PAS domain [Interproscan]. 0.01 OrthoFinder
Cz06g35270.t1 No alias Hypothetical protein 0.02 OrthoFinder
Cz06g35280.t1 No alias Hypothetical protein 0.01 OrthoFinder
Cz06g35290.t1 No alias PAS domain [Interproscan]. 0.01 OrthoFinder
Cz06g35300.t1 No alias Hypothetical protein 0.02 OrthoFinder
Dusal.0012s00038.1 33201994 Hypothetical protein 0.03 OrthoFinder
Dusal.0065s00022.1 33185844 PAS domain [Interproscan]. 0.02 OrthoFinder
Dusal.1094s00001.1 33191764 Hypothetical protein 0.01 OrthoFinder
Vocar.0001s0015.1 32886137 PAS fold [Interproscan]. 0.01 OrthoFinder
Vocar.0003s0436.1 32889288 PAS domain [Interproscan]. 0.01 OrthoFinder
Vocar.0003s0445.1 32888873 PAS domain; PAS fold [Interproscan]. 0.01 OrthoFinder
Vocar.0012s0063.1 32895032 PAS domain [Interproscan]. 0.01 OrthoFinder
Vocar.0012s0199.1 32895061 PAS fold [Interproscan]. 0.01 OrthoFinder
Vocar.0021s0101.1 32895906 PAS domain [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01000217.1_cds_GFH09211.1_3688 HaLaN_04313, GFH09211 PAS domain [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01000301.1_cds_GFH10266.1_4743 HaLaN_05548, GFH10266 Hypothetical protein 0.01 OrthoFinder
lcl|BLLF01000958.1_cds_GFH16182.1_10659 HaLaN_12556, GFH16182 PAS domain-containing protein 0.01 OrthoFinder
lcl|BLLF01002984.1_cds_GFH25993.1_20470 HaLaN_24060, GFH25993 PAS domain [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01003353.1_cds_GFH27111.1_21588 HaLaN_25377, GFH27111 PAS fold [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004112 cyclic-nucleotide phosphodiesterase activity IEP Enrichment
MF GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity IEP Enrichment
BP GO:0006753 nucleoside phosphate metabolic process IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
MF GO:0008081 phosphoric diester hydrolase activity IEP Enrichment
BP GO:0009117 nucleotide metabolic process IEP Enrichment
BP GO:0009165 nucleotide biosynthetic process IEP Enrichment
BP GO:0009187 cyclic nucleotide metabolic process IEP Enrichment
BP GO:0009190 cyclic nucleotide biosynthetic process IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000014 PAS 132 233
IPR000014 PAS 261 368
No external refs found!