1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro281_g107170.1

Sro281_g107170.1 (Contig3786.g29056)


Aliases : Contig3786.g29056

Description : Processing-splicing factor 8


Gene families : OG_01_0001747 (OrthoFinder) Phylogenetic Tree(s): OG0001747_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro281_g107170.1
Cluster HCCA: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000093.136 tig00000093_g3562.t1 Pre-mRNA-processing-splicing factor 8A OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00000093.137 tig00000093_g3562.t1 RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder
Cre01.g016050 30789071, PRP8 RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder
Cz07g16060.t1 No alias Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding;... 0.03 OrthoFinder
Dusal.0327s00002.1 33200457 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding;... 0.02 OrthoFinder
EOD24715 No alias PROCT domain; RNA recognition motif, spliceosomal PrP8;... 0.02 OrthoFinder
OT_11G00220.1 No alias Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding;... 0.02 OrthoFinder
PTI_07G01950.1 No alias PROCN domain; Pre-mRNA-processing-splicing factor 8,... 0.09 OrthoFinder
TP02G09170.1 No alias PROCT domain; PROCN domain; RNA recognition motif,... 0.03 OrthoFinder
Transcript_contig_53842 53842 PROCT domain; Pre-mRNA-processing-splicing factor 8,... 0.01 OrthoFinder
lcl|BLLF01000717.1_cds_GFH14365.1_8842 HaLaN_10406, GFH14365 MPN domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW60964.1_258 PRW60964 Pre-mRNA-processing-splicing factor 8 isoform A 0.04 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494906.1_3436 KAA8494906 Pre-mRNA-processing-splicing factor 8 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0017070 U6 snRNA binding IEA Interproscan
MF GO:0030623 U5 snRNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006644 phospholipid metabolic process IEP Enrichment
BP GO:0006650 glycerophospholipid metabolic process IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0043531 ADP binding IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046486 glycerolipid metabolic process IEP Enrichment
BP GO:0046488 phosphatidylinositol metabolic process IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR019580 Prp8_U6-snRNA-bd 1640 1798
IPR012984 PROCT 2416 2541
IPR019582 RRM_spliceosomal_PrP8 1177 1267
IPR012592 PROCN 585 991
IPR021983 PRP8_domainIV 1958 2187
IPR019581 Prp8_U5-snRNA-bd 1408 1541
IPR012591 PRO8NT 180 332
No external refs found!