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  5. Sro2668_g334200.1

Sro2668_g334200.1 (Contig4265.g32274)


Aliases : Contig4265.g32274

Description : Lactococcin-G-processing and transport ATP-binding protein LagD


Gene families : OG_01_0000325 (OrthoFinder) Phylogenetic Tree(s): OG0000325_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro2668_g334200.1
Cluster HCCA: Cluster_296

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021352.17 tig00021352_g20685.t1 Solute transport.primary active transport.ABC... 0.02 OrthoFinder
Cre13.g604150 30784514 ABC transporter B family member 25, mitochondrial... 0.03 OrthoFinder
Cz13g19190.t1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
OT_13G00820.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
Sro2147_g316480.1 Contig4426.g33223 Lactococcin-G-processing and transport ATP-binding protein LagD 0.02 OrthoFinder
Transcript_contig_54542 54542 ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
Vocar.0001s1041.1 32885959 ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
XM_003057028.1 MicpuC2_45420, 45420 ATP-binding cassette superfamily 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008324 cation transmembrane transporter activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
MF GO:0046873 metal ion transmembrane transporter activity IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051259 protein complex oligomerization IEP Enrichment
BP GO:0051260 protein homooligomerization IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 480 629
IPR011527 ABC1_TM_dom 135 412
No external refs found!