Sro25_g017380.1 (Contig1417.g13077)

Aliases : Contig1417.g13077

Description : Virulence factors putative positive transcription regulator BvgA

Gene families : OG_01_0000006 (OrthoFinder) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sro25_g017380.1
Cluster	HCCA: Cluster_114

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000158.93	tig00000158_g10200.t1	Probable histidine kinase 5 OS=Oryza sativa subsp. japonica	0.01	OrthoFinder
Cpa\|evm.model.tig00020553.260	tig00020553_g10746.t1	Probable histidine kinase 6 OS=Oryza sativa subsp. japonica	0.02	OrthoFinder
Cpa\|evm.model.tig00020616.22	tig00020616_g12258.t1	Probable histidine kinase 3 OS=Oryza sativa subsp. indica	0.01	OrthoFinder
Cre11.g467678	30775629, COP6	Histidine kinase 5 OS=Arabidopsis thaliana	0.03	OrthoFinder
Dusal.0198s00010.1	33192678	Signal transduction response regulator, receiver domain;...	0.02	OrthoFinder
Dusal.0212s00007.1	33202592	Hypothetical protein	0.01	OrthoFinder
Dusal.0212s00008.1	33202594	Signal transduction response regulator, receiver domain;...	0.02	OrthoFinder
Dusal.0675s00001.1	33202443	Histidine kinase/HSP90-like ATPase [Interproscan].	0.02	OrthoFinder
Dusal.0675s00003.1	33202441	Archaeal/bacterial/fungal rhodopsins [Interproscan].	0.02	OrthoFinder
SymbC1.scaffold2307.30	2307.30	Histidine kinase/HSP90-like ATPase; Signal transduction...	0.02	OrthoFinder
SymbC1.scaffold3627.5	3627.5	Signal transduction response regulator, receiver domain...	0.02	OrthoFinder
XM_003057225.1	MicpuC2_10763, 10763	Signal transduction histidine kinase,...	0.02	OrthoFinder
lcl\|BLLF01002094.1_cds_GFH22668.1_17145	HaLaN_20168, GFH22668	Signal transduction response regulator, receiver domain...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	Enrichment
MF	GO:0003824	catalytic activity	IEP	Enrichment
MF	GO:0003924	GTPase activity	IEP	Enrichment
BP	GO:0006066	alcohol metabolic process	IEP	Enrichment
BP	GO:0006396	RNA processing	IEP	Enrichment
BP	GO:0006400	tRNA modification	IEP	Enrichment
BP	GO:0006629	lipid metabolic process	IEP	Enrichment
BP	GO:0008033	tRNA processing	IEP	Enrichment
BP	GO:0008152	metabolic process	IEP	Enrichment
BP	GO:0009451	RNA modification	IEP	Enrichment
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Enrichment
BP	GO:0016070	RNA metabolic process	IEP	Enrichment
MF	GO:0016740	transferase activity	IEP	Enrichment
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Enrichment
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Enrichment
MF	GO:0016763	pentosyltransferase activity	IEP	Enrichment
BP	GO:0019751	polyol metabolic process	IEP	Enrichment
BP	GO:0032259	methylation	IEP	Enrichment
BP	GO:0032958	inositol phosphate biosynthetic process	IEP	Enrichment
BP	GO:0034470	ncRNA processing	IEP	Enrichment
BP	GO:0036260	RNA capping	IEP	Enrichment
BP	GO:0043412	macromolecule modification	IEP	Enrichment
BP	GO:0043414	macromolecule methylation	IEP	Enrichment
BP	GO:0043647	inositol phosphate metabolic process	IEP	Enrichment
BP	GO:0044237	cellular metabolic process	IEP	Enrichment
BP	GO:0044238	primary metabolic process	IEP	Enrichment
BP	GO:0046165	alcohol biosynthetic process	IEP	Enrichment
BP	GO:0046173	polyol biosynthetic process	IEP	Enrichment
BP	GO:0071704	organic substance metabolic process	IEP	Enrichment
BP	GO:0090304	nucleic acid metabolic process	IEP	Enrichment
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Enrichment
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001789	Sig_transdc_resp-reg_receiver	84	202
IPR000792	Tscrpt_reg_LuxR_C	255	309

External Links

No external refs found!

Sro25_g017380.1 (Contig1417.g13077)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation