Aliases : Contig716.g8270
Description : Turnover protein 4 homolog
Gene families : OG_01_0003015 (OrthoFinder) Phylogenetic Tree(s): OG0003015_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Sro2516_g329950.1 | |
Cluster | HCCA: Cluster_51 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cre06.g261700 | 30779803 | No description available | 0.17 | OrthoFinder | |
Cz09g30160.t1 | No alias | Ribosomal protein L10P; 60S ribosomal protein L10P,... | 0.1 | OrthoFinder | |
EOD15493 | No alias | 60S ribosomal protein L10P, insertion domain; Ribosomal... | 0.02 | OrthoFinder | |
EOD42017 | No alias | 60S ribosomal protein L10P, insertion domain; Ribosomal... | 0.13 | OrthoFinder | |
OT_17G00690.1 | No alias | Ribosomal protein L10P; 60S ribosomal protein L10P,... | 0.23 | OrthoFinder | |
PTI_07G02090.1 | No alias | 60S ribosomal protein L10P, insertion domain; Ribosomal... | 0.08 | OrthoFinder | |
TP16G01380.1 | No alias | 60S ribosomal protein L10P, insertion domain; Ribosomal... | 0.23 | OrthoFinder | |
Transcript_contig_57106 | 57106 | Ribosomal protein L10P; 60S ribosomal protein L10P,... | 0.07 | OrthoFinder | |
Vocar.0002s0474.1 | 32891090 | 60S ribosomal protein L10P, insertion domain; Ribosomal... | 0.02 | OrthoFinder | |
XM_002508822.1 | MICPUN_85635, 85635 | Ribosomal protein L10P; 60S ribosomal protein L10P,... | 0.16 | OrthoFinder | |
XM_003063924.1 | MicpuC2_30129, 30129 | 60S ribosomal protein L10P, insertion domain; Ribosomal... | 0.12 | OrthoFinder | |
lcl|BLLF01002268.1_cds_GFH23419.1_17896 | HaLaN_21028, GFH23419 | Ribosome assembly factor mrt4 | 0.02 | OrthoFinder | |
lcl|LHPG02000011.1_cds_PRW45636.1_1527 | PRW45636 | MRNA turnover 4-like protein | 0.22 | OrthoFinder | |
lcl|VRMN01000006.1_cds_KAA8493760.1_4522 | KAA8493760 | MRNA turnover protein 4-like | 0.12 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0042254 | ribosome biogenesis | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000154 | rRNA modification | IEP | Enrichment |
MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Enrichment |
BP | GO:0001510 | RNA methylation | IEP | Enrichment |
MF | GO:0003674 | molecular_function | IEP | Enrichment |
MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
MF | GO:0003723 | RNA binding | IEP | Enrichment |
MF | GO:0004408 | holocytochrome-c synthase activity | IEP | Enrichment |
MF | GO:0005488 | binding | IEP | Enrichment |
MF | GO:0005515 | protein binding | IEP | Enrichment |
MF | GO:0005524 | ATP binding | IEP | Enrichment |
MF | GO:0005525 | GTP binding | IEP | Enrichment |
CC | GO:0005634 | nucleus | IEP | Enrichment |
CC | GO:0005730 | nucleolus | IEP | Enrichment |
CC | GO:0005739 | mitochondrion | IEP | Enrichment |
BP | GO:0006364 | rRNA processing | IEP | Enrichment |
BP | GO:0006396 | RNA processing | IEP | Enrichment |
MF | GO:0008168 | methyltransferase activity | IEP | Enrichment |
MF | GO:0008649 | rRNA methyltransferase activity | IEP | Enrichment |
BP | GO:0009116 | nucleoside metabolic process | IEP | Enrichment |
BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
BP | GO:0016072 | rRNA metabolic process | IEP | Enrichment |
MF | GO:0016435 | rRNA (guanine) methyltransferase activity | IEP | Enrichment |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Enrichment |
MF | GO:0016846 | carbon-sulfur lyase activity | IEP | Enrichment |
MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Enrichment |
BP | GO:0030490 | maturation of SSU-rRNA | IEP | Enrichment |
MF | GO:0030515 | snoRNA binding | IEP | Enrichment |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
CC | GO:0030684 | preribosome | IEP | Enrichment |
CC | GO:0030688 | preribosome, small subunit precursor | IEP | Enrichment |
BP | GO:0031167 | rRNA methylation | IEP | Enrichment |
BP | GO:0032259 | methylation | IEP | Enrichment |
MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Enrichment |
BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
MF | GO:0036094 | small molecule binding | IEP | Enrichment |
BP | GO:0036265 | RNA (guanine-N7)-methylation | IEP | Enrichment |
MF | GO:0043167 | ion binding | IEP | Enrichment |
MF | GO:0043168 | anion binding | IEP | Enrichment |
CC | GO:0043226 | organelle | IEP | Enrichment |
CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
BP | GO:0043414 | macromolecule methylation | IEP | Enrichment |
BP | GO:0070475 | rRNA base methylation | IEP | Enrichment |
BP | GO:0070476 | rRNA (guanine-N7)-methylation | IEP | Enrichment |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | Enrichment |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
BP | GO:1901657 | glycosyl compound metabolic process | IEP | Enrichment |
No external refs found! |