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  5. Sro2354_g324530.1

Sro2354_g324530.1 (Contig74.g792)


Aliases : Contig74.g792

Description : Ribosomal large subunit pseudouridine synthase


Gene families : OG_01_0000056 (OrthoFinder) Phylogenetic Tree(s): OG0000056_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro2354_g324530.1
Cluster HCCA: Cluster_332

Target Alias Description ECC score Gene Family Method Actions
Cre02.g078750 30785017, PUS3 RNA processing.RNA... 0.01 OrthoFinder
Cre02.g144002 30785921 No description available 0.01 OrthoFinder
EOD09858 No alias Hypothetical protein [Ensembl]. 0.01 OrthoFinder
PTI_05G01830.1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.03 OrthoFinder
PTI_22G01270.1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
Sro29_g019180.1 Contig1384.g12761 Ribosomal large subunit pseudouridine synthase D 0.02 OrthoFinder
TP11G01640.1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.03 OrthoFinder
TP14G01690.1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
XM_002500429.1 MICPUN_56859, 56859 Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01003665.1_cds_GFH27901.1_22378 HaLaN_26292, GFH27901 Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
CC GO:0005779 integral component of peroxisomal membrane IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006766 vitamin metabolic process IEP Enrichment
BP GO:0006767 water-soluble vitamin metabolic process IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
BP GO:0007031 peroxisome organization IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008417 fucosyltransferase activity IEP Enrichment
BP GO:0009110 vitamin biosynthetic process IEP Enrichment
BP GO:0009235 cobalamin metabolic process IEP Enrichment
BP GO:0009236 cobalamin biosynthetic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016852 sirohydrochlorin cobaltochelatase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR006145 PsdUridine_synth_RsuA/RluA 164 343
No external refs found!