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  5. Sro2335_g323820.1

Sro2335_g323820.1 (Contig3717.g28592)


Aliases : Contig3717.g28592

Description : Autoinducer 1 sensor kinase/phosphatase LuxN


Gene families : OG_01_0001328 (OrthoFinder) Phylogenetic Tree(s): OG0001328_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro2335_g323820.1
Cluster HCCA: Cluster_305

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000498.35 tig00000498_g1611.t1 No description available 0.01 OrthoFinder
Cpa|evm.model.tig00001086.11 tig00001086_g6846.t1 No description available 0.02 OrthoFinder
Cpa|evm.model.tig00020629.120 tig00020629_g12446.t1 Probable histidine kinase 3 OS=Oryza sativa subsp. indica 0.02 OrthoFinder
Sro1060_g236670.1 Contig1660.g14960 Sensor kinase/phosphatase LuxQ 0.02 OrthoFinder
Sro1705_g292400.1 Contig4149.g31668 Hypothetical protein 0.03 OrthoFinder
Sro60_g034610.1 Contig797.g8938 Sensor kinase/phosphatase LuxQ 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
MF GO:0004888 transmembrane signaling receptor activity IEP Enrichment
MF GO:0004930 G protein-coupled receptor activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
MF GO:0038023 signaling receptor activity IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
MF GO:0060089 molecular transducer activity IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR003594 HATPase_C 663 802
IPR001789 Sig_transdc_resp-reg_receiver 842 956
No external refs found!