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  5. Sro214_g088640.1

Sro214_g088640.1 (Contig282.g3649)


Aliases : Contig282.g3649

Description : Suppressor of glycerol defect protein 1


Gene families : OG_01_0003434 (OrthoFinder) Phylogenetic Tree(s): OG0003434_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro214_g088640.1
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Cre09.g415200 30780560 No description available 0.09 OrthoFinder
Dusal.0085s00020.1 33196214 Hypothetical protein 0.01 OrthoFinder
EOD41968 No alias Nucleolar protein [Ensembl]. 0.1 OrthoFinder
OT_15G01870.1 No alias Initiation factor eIF-4 gamma, MA3; MIF4G-like, type 3... 0.18 OrthoFinder
PTI_22G00340.1 No alias Initiation factor eIF-4 gamma, MA3; MIF4G-like, type 3... 0.25 OrthoFinder
UNPLg00552.t1 No alias Initiation factor eIF-4 gamma, MA3; MIF4G-like, type 3... 0.04 OrthoFinder
Vocar.0013s0184.1 32896490 MIF4G-like, type 3; Initiation factor eIF-4 gamma, MA3... 0.04 OrthoFinder
XM_002505308.1 MICPUN_62790, 62790 Initiation factor eIF-4 gamma, MA3; MIF4G-like, type 3... 0.13 OrthoFinder
XM_003060215.1 MicpuC2_59865, 59865 Initiation factor eIF-4 gamma, MA3; MIF4G-like, type 3... 0.02 OrthoFinder
lcl|LHPG02000019.1_cds_PRW32550.1_3976 PRW32550 Nucleolar MIF4G domain-containing 1 isoform A 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498286.1_7239 KAA8498286 Nucleolar MIF4G domain-containing protein 1 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR003891 Initiation_fac_eIF4g_MI 601 704
IPR003890 MIF4G-like_typ-3 324 490
No external refs found!