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  5. Sro2147_g316480.1

Sro2147_g316480.1 (Contig4426.g33223)


Aliases : Contig4426.g33223

Description : Lactococcin-G-processing and transport ATP-binding protein LagD


Gene families : OG_01_0000325 (OrthoFinder) Phylogenetic Tree(s): OG0000325_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro2147_g316480.1
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Cre13.g604150 30784514 ABC transporter B family member 25, mitochondrial... 0.02 OrthoFinder
Cz09g27180.t1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
Cz13g19190.t1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
OT_13G00820.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
PTI_06G00210.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.06 OrthoFinder
Sro2668_g334200.1 Contig4265.g32274 Lactococcin-G-processing and transport ATP-binding protein LagD 0.02 OrthoFinder
TP01G01620.1 No alias ABC transporter-like; ABC transporter type 1,... 0.06 OrthoFinder
XM_003061531.1 MicpuC2_28771, 28771 ATP-binding cassette superfamily 0.01 OrthoFinder
lcl|LHPG02000020.1_cds_PRW21021.1_4894 PRW21021 ABC transporter B family member mitochondrial 0.02 OrthoFinder
lcl|LHPG02000020.1_cds_PRW21097.1_4913 PRW21097 ATP-binding cassette sub-family B member mitochondrial isoform B 0.01 OrthoFinder
lcl|LHPG02000020.1_cds_PRW21098.1_4914 PRW21098 ATP-binding cassette sub-family B member mitochondrial isoform A 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
BP GO:0000097 sulfur amino acid biosynthetic process IEP Enrichment
MF GO:0000213 tRNA-intron endonuclease activity IEP Enrichment
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
MF GO:0004363 glutathione synthase activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006535 cysteine biosynthetic process from serine IEP Enrichment
BP GO:0006563 L-serine metabolic process IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006749 glutathione metabolic process IEP Enrichment
BP GO:0006750 glutathione biosynthetic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
MF GO:0008198 ferrous iron binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0009001 serine O-acetyltransferase activity IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009070 serine family amino acid biosynthetic process IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
MF GO:0016412 serine O-acyltransferase activity IEP Enrichment
MF GO:0016413 O-acetyltransferase activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
MF GO:0018580 nitronate monooxygenase activity IEP Enrichment
BP GO:0019184 nonribosomal peptide biosynthetic process IEP Enrichment
BP GO:0019344 cysteine biosynthetic process IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 644 793
IPR011527 ABC1_TM_dom 278 526
No external refs found!