Sro2115_g315160.1 (Contig3983.g30612)


Aliases : Contig3983.g30612

Description : Dependent RNA helicase


Gene families : OG_01_0001367 (OrthoFinder) Phylogenetic Tree(s): OG0001367_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro2115_g315160.1
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020544.5 tig00020544_g10485.t2 DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa... 0.06 OrthoFinder
Cre10.g427700 30790252 DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa... 0.04 OrthoFinder
OT_04G05300.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
TP09G02940.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
MF GO:0031369 translation initiation factor binding IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 422 531
IPR011545 DEAD/DEAH_box_helicase_dom 207 388
No external refs found!