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  5. Sro1996_g310050.1

Sro1996_g310050.1 (Contig3556.g27466)


Aliases : Contig3556.g27466

Description : Ligase [GDP-forming] subunit beta, mitochondrial


Gene families : OG_01_0001703 (OrthoFinder) Phylogenetic Tree(s): OG0001703_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1996_g310050.1
Cluster HCCA: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001376.28 tig00001376_g8548.t1 Cellular respiration.tricarboxylic acid... 0.04 OrthoFinder
Cpa|evm.model.tig00001718.6 tig00001718_g9585.t1 Cellular respiration.tricarboxylic acid... 0.02 OrthoFinder
Cre17.g703700 30781597, SCL2 Cellular respiration.tricarboxylic acid... 0.02 OrthoFinder
Cz03g31200.t1 No alias ATP-grasp fold, succinyl-CoA synthetase-type;... 0.03 OrthoFinder
EOD16272 No alias Succinyl-coa ligase [Ensembl]. 0.05 OrthoFinder
PTI_06G04240.1 No alias ATP-grasp fold, succinyl-CoA synthetase-type;... 0.03 OrthoFinder
SymbC1.scaffold109.77 109.77 Lactate/malate dehydrogenase, C-terminal; Lactate/malate... 0.02 OrthoFinder
TP01G09560.1 No alias ATP-grasp fold, succinyl-CoA synthetase-type;... 0.04 OrthoFinder
XM_003059531.1 MicpuC2_34011, 34011 ATP-grasp fold, succinyl-CoA synthetase-type;... 0.03 OrthoFinder
lcl|BLLF01005401.1_cds_GFH31143.1_25620 HaLaN_30125, GFH31143 Succinyl-CoA synthetase beta chain 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59384.1_7498 PRW59384 Succinyl-ligase [ADP-forming] subunit mitochondrial isoform A 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499529.1_8482 KAA8499529 Succinate--CoA ligase ADP-forming subunit beta, mitochondrial 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0003779 actin binding IEP Enrichment
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006694 steroid biosynthetic process IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0008202 steroid metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0016229 steroid dehydrogenase activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
InterPro domains Description Start Stop
IPR013650 ATP-grasp_succ-CoA_synth-type 27 232
IPR005811 CoA_ligase 292 412
No external refs found!