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  5. Sro1966_g308300.1

Sro1966_g308300.1 (Contig1903.g16494)


Aliases : Contig1903.g16494

Description : Hypothetical protein


Gene families : OG_01_0000121 (OrthoFinder) Phylogenetic Tree(s): OG0000121_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1966_g308300.1
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
Sro1172_g248930.1 Contig1295.g12030 Hypothetical protein 0.1 OrthoFinder
Sro1340_g264410.1 Contig1391.g12823 Hypothetical protein 0.09 OrthoFinder
Sro1587_g284230.1 Contig878.g9433 Hypothetical protein 0.06 OrthoFinder
Sro1587_g284240.1 Contig878.g9434 Hypothetical protein 0.05 OrthoFinder
Sro160_g072320.1 Contig2985.g23728 Hypothetical protein 0.1 OrthoFinder
Sro1687_g291190.1 Contig3941.g30218 Retrotransposon protein 0.11 OrthoFinder
Sro168_g074640.1 Contig1642.g14795 Hypothetical protein 0.05 OrthoFinder
Sro168_g074650.1 Contig1642.g14796 Hypothetical protein 0.07 OrthoFinder
Sro1718_g293300.1 Contig3856.g29678 Hypothetical protein 0.03 OrthoFinder
Sro1944_g306940.1 Contig4559.g34042 Hypothetical protein 0.03 OrthoFinder
Sro2081_g313760.1 Contig563.g7156 Retrotransposon protein 0.03 OrthoFinder
Sro2183_g318040.1 Contig2199.g18315 Hypothetical protein 0.04 OrthoFinder
Sro2313_g322880.1 Contig2128.g17959 Retrotransposon protein 0.1 OrthoFinder
Sro2371_g325220.1 Contig2343.g19263 Hypothetical protein 0.04 OrthoFinder
Sro2671_g334310.1 Contig3506.g27169 Retrotransposon protein 0.05 OrthoFinder
Sro2778_g336910.1 Contig3659.g28248 Hypothetical protein 0.03 OrthoFinder
Sro3304_g346470.1 Contig606.g7512 Hypothetical protein 0.04 OrthoFinder
Sro3370_g347320.1 Contig805.g8992 Hypothetical protein 0.02 OrthoFinder
Sro3373_g347370.1 Contig4689.g34856 Hypothetical protein 0.05 OrthoFinder
Sro3380_g347450.1 Contig1919.g16554 Hypothetical protein 0.05 OrthoFinder
Sro3381_g347460.1 Contig1231.g11558 Hypothetical protein 0.08 OrthoFinder
Sro4143_g353160.1 Contig1243.g11621 Hypothetical protein 0.12 OrthoFinder
Sro4143_g353170.1 Contig1243.g11622 Hypothetical protein 0.08 OrthoFinder
Sro422_g139700.1 Contig292.g3818 Retrotransposon protein 0.07 OrthoFinder
Sro464_g148350.1 Contig363.g4883 Hypothetical protein 0.07 OrthoFinder
Sro476_g150560.1 Contig4641.g34588 Hypothetical protein 0.07 OrthoFinder
Sro494_g154220.1 Contig3119.g24787 Hypothetical protein 0.1 OrthoFinder
Sro494_g154230.1 Contig3119.g24788 Retrotransposon protein 0.04 OrthoFinder
Sro49_g028630.1 Contig2054.g17613 Retrotransposon protein 0.05 OrthoFinder
Sro66_g037090.1 Contig399.g5379 Retrotransposon protein 0.1 OrthoFinder
Sro66_g037110.1 Contig399.g5381 Hypothetical protein 0.05 OrthoFinder
Sro715_g191780.1 Contig4130.g31590 Hypothetical protein 0.04 OrthoFinder
Sro730_g193960.1 Contig80.g828 Hypothetical protein 0.12 OrthoFinder
Sro749_g196740.1 Contig2460.g20131 Hypothetical protein 0.06 OrthoFinder
Sro833_g208550.1 Contig120.g1361 Retrotransposon protein 0.11 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment

No InterPro domains available for this sequence

No external refs found!