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  5. Sro1952_g307420.1

Sro1952_g307420.1 (Contig4337.g32706)


Aliases : Contig4337.g32706

Description : Transport protein SEC24


Gene families : OG_01_0000893 (OrthoFinder) Phylogenetic Tree(s): OG0000893_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1952_g307420.1
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000829.3 tig00000829_g4645.t1 Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 OrthoFinder
Cre02.g091150 30786099, SEC24A Vesicle trafficking.Coat protein II (COPII) coatomer... 0.05 OrthoFinder
EOD30014 No alias Secretory protein 24A [Ensembl]. 0.02 OrthoFinder
EOD35905 No alias Sec23/Sec24 beta-sandwich; Sec23/Sec24, trunk domain... 0.02 OrthoFinder
PTI_11G00980.1 No alias Gelsolin-like domain; Sec23/Sec24, helical domain;... 0.03 OrthoFinder
Vocar.0001s1208.1 32884601 Zinc finger, Sec23/Sec24-type; Sec23/Sec24, helical... 0.02 OrthoFinder
lcl|BLLF01000072.1_cds_GFH07062.1_1539 HaLaN_01811, GFH07062 COP-II coat subunit 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59573.1_6417 PRW59573 Transport Sec24-like protein 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW60099.1_6260 PRW60099 Transport Sec24-like protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
CC GO:0030127 COPII vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR007123 Gelsolin-like_dom 840 891
IPR012990 Sec23_24_beta_S 587 671
IPR006895 Znf_Sec23_Sec24 270 308
IPR006896 Sec23/24_trunk_dom 345 581
IPR006900 Sec23/24_helical_dom 682 797
No external refs found!