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  5. Sro194_g083010.1

Sro194_g083010.1 (Contig237.g2896)


Aliases : Contig237.g2896

Description : Small nuclear ribonucleoprotein E


Gene families : OG_01_0002761 (OrthoFinder) Phylogenetic Tree(s): OG0002761_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro194_g083010.1
Cluster HCCA: Cluster_251

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020563.151 tig00020563_g11353.t1 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.05 OrthoFinder
Cre08.g385200 30773598 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder
Dusal.0122s00015.1 33203032 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.01 OrthoFinder
EOD21539 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.06 OrthoFinder
EOD22134 No alias Small nuclear ribonucleo protein [Ensembl]. 0.06 OrthoFinder
PTI_21G00720.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
TP06G02670.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.03 OrthoFinder
Vocar.0008s0078.1 32897195 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
MF GO:0004857 enzyme inhibitor activity IEP Enrichment
MF GO:0004864 protein phosphatase inhibitor activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
BP GO:0010921 regulation of phosphatase activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019208 phosphatase regulator activity IEP Enrichment
MF GO:0019212 phosphatase inhibitor activity IEP Enrichment
BP GO:0019220 regulation of phosphate metabolic process IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
MF GO:0019888 protein phosphatase regulator activity IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
BP GO:0031399 regulation of protein modification process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0035303 regulation of dephosphorylation IEP Enrichment
BP GO:0035304 regulation of protein dephosphorylation IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0051174 regulation of phosphorus metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051336 regulation of hydrolase activity IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 21 84
No external refs found!