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  5. Sro1939_g306550.1

Sro1939_g306550.1 (Contig1997.g17090)


Aliases : Contig1997.g17090

Description : Hybrid signal transduction histidine kinase J


Gene families : OG_01_0000006 (OrthoFinder) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1939_g306550.1
Cluster HCCA: Cluster_271

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000093.235 tig00000093_g3661.t1 Histidine kinase 3 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00000190.40 tig00000190_g13861.t1 Ethylene receptor OS=Nicotiana tabacum 0.01 OrthoFinder
Cpa|evm.model.tig00000202.6 tig00000254_g22474.t1 Histidine kinase 3 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00000325.13 tig00000325_g24095.t1 Ethylene receptor 2 OS=Solanum lycopersicum 0.01 OrthoFinder
Cpa|evm.model.tig00000605.24 tig00000605_g2490.t1 No description available 0.01 OrthoFinder
Cpa|evm.model.tig00000889.2 tig00000889_g5289.t1 No description available 0.02 OrthoFinder
Cpa|evm.model.tig00020510.27 tig00020510_g9811.t1 Ethylene receptor 1 OS=Brassica oleracea 0.02 OrthoFinder
Cpa|evm.model.tig00020553.260 tig00020553_g10746.t1 Probable histidine kinase 6 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder
Cpa|evm.model.tig00021137.20 tig00021137_g18985.t1 Ethylene receptor 1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00021348.102 tig00021348_g20609.t1 No description available 0.01 OrthoFinder
Cpa|evm.model.tig00021348.103 tig00021348_g20609.t1 Probable histidine kinase 4 OS=Oryza sativa subsp. japonica 0.01 OrthoFinder
Sro168_g074900.1 Contig1642.g14821 Sensor kinase/phosphatase LuxQ 0.03 OrthoFinder
Sro287_g108630.1 Contig252.g3104 Sensor protein kinase WalK (Fragment) 0.03 OrthoFinder
lcl|BLLF01000561.1_cds_GFH12981.1_7458 HaLaN_08775, GFH12981 Signal transduction histidine kinase,... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEA Interproscan
BP GO:0000160 phosphorelay signal transduction system IEA Interproscan
BP GO:0007165 signal transduction IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR003594 HATPase_C 282 409
IPR003661 HisK_dim/P 172 234
IPR001789 Sig_transdc_resp-reg_receiver 627 736
No external refs found!