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  5. Sro183_g079600.1

Sro183_g079600.1 (Contig3056.g24305)


Aliases : Contig3056.g24305

Description : Multiple drug resistance-associated protein-like transporter 1


Gene families : OG_01_0000039 (OrthoFinder) Phylogenetic Tree(s): OG0000039_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro183_g079600.1
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000133.23 tig00000133_g7684.t1 ABC transporter C family member 2 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00000158.84 tig00000158_g10189.t1 Solute transport.primary active transport.ABC... 0.02 OrthoFinder
Cpa|evm.model.tig00000681.7 tig00000681_g3053.t1 ABC transporter C family member 1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00000718.1 tig00000718_g3679.t1 ABC transporter C family member 2 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00000718.2 tig00000718_g3679.t1 ABC transporter C family member 2 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00001024.2 tig00001729_g9740.t1 ABC transporter C family member 14 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00020553.190 tig00020553_g10680.t1 ABC transporter C family member 4 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cpa|evm.model.tig00020553.191 tig00020553_g10681.t1 ABC transporter C family member 11 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cpa|evm.model.tig00020592.4 tig00020592_g11633.t1 ABC transporter C family member 1 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cpa|evm.model.tig00020684.9 tig00020684_g12858.t1 Solute transport.primary active transport.ABC... 0.01 OrthoFinder
Cre02.g097800 30785105 ABC transporter C family member 2 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cz05g17060.t1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.04 OrthoFinder
Dusal.0852s00004.1 33185428 ABC transporter-like; ABC transporter type 1,... 0.01 OrthoFinder
EOD08599 No alias ABC transporter type 1, transmembrane domain; ABC... 0.03 OrthoFinder
EOD26066 No alias EF-hand domain; ABC transporter type 1, transmembrane... 0.03 OrthoFinder
EOD33714 No alias ABC transporter type 1, transmembrane domain; ABC... 0.03 OrthoFinder
EOD34349 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
EOD37777 No alias Multidrug resistance-associated protein, ABC superfamily... 0.02 OrthoFinder
OT_03G00040.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
PTI_01G01590.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.05 OrthoFinder
PTI_03G04630.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
PTI_03G06590.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.05 OrthoFinder
TP07G05800.1 No alias ABC transporter-like; ABC transporter type 1,... 0.04 OrthoFinder
XM_002508173.1 MICPUN_94915, 94915 ATP-binding cassette superfamily 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015297 antiporter activity IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
BP GO:1903825 organic acid transmembrane transport IEP Enrichment
BP GO:1905039 carboxylic acid transmembrane transport IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 1257 1407
IPR011527 ABC1_TM_dom 913 1158
IPR011527 ABC1_TM_dom 210 481
IPR003439 ABC_transporter-like_ATP-bd 618 762
No external refs found!