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  5. Sro1830_g300310.1

Sro1830_g300310.1 (Contig662.g7834)


Aliases : Contig662.g7834

Description : Epsilon catalytic subunit A


Gene families : OG_01_0002052 (OrthoFinder) Phylogenetic Tree(s): OG0002052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1830_g300310.1
Cluster HCCA: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000970.30 tig00000970_g5849.t1 Cell cycle.interphase.DNA replication.elongation.DNA... 0.01 OrthoFinder
Cpa|evm.model.tig00000970.31 tig00000970_g5849.t1 DNA polymerase epsilon catalytic subunit A... 0.02 OrthoFinder
Cre03.g179961 30788184 Cell cycle.interphase.DNA replication.elongation.DNA... 0.02 OrthoFinder
Cz01g29080.t1 No alias DNA-directed DNA polymerase, family B, multifunctional... 0.01 OrthoFinder
EOD04907 No alias Hypothetical protein [Ensembl]. 0.04 OrthoFinder
EOD06573 No alias DNA polymerase epsilon catalytic subunit A/1 [Ensembl]. 0.01 OrthoFinder
OT_11G01900.1 No alias DNA-directed DNA polymerase, family B, multifunctional... 0.02 OrthoFinder
PTI_27G01310.1 No alias DNA-directed DNA polymerase, family B, multifunctional... 0.01 OrthoFinder
TP03G08210.1 No alias DNA-directed DNA polymerase, family B, exonuclease... 0.02 OrthoFinder
Transcript_contig_613 613 DNA-directed DNA polymerase, family B, exonuclease... 0.04 OrthoFinder
XM_002508999.1 MICPUN_63095, 63095 DNA polymerase epsilon, catalytic subunit A, C-terminal;... 0.02 OrthoFinder
lcl|BLLF01001835.1_cds_GFH21468.1_15945 HaLaN_18779, GFH21468 DNA polymerase epsilon catalytic subunit 0.03 OrthoFinder
lcl|BLLF01001835.1_cds_GFH21469.1_15946 HaLaN_18780, GFH21469 DNA polymerase epsilon catalytic subunit 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497716.1_6669 KAA8497716 DNA polymerase epsilon catalytic subunit A 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003887 DNA-directed DNA polymerase activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Enrichment
CC GO:0000786 nucleosome IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
MF GO:0016758 hexosyltransferase activity IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0051259 protein complex oligomerization IEP Enrichment
BP GO:0051260 protein homooligomerization IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
InterPro domains Description Start Stop
IPR006134 DNA-dir_DNA_pol_B_multi_dom 710 1171
IPR006133 DNA-dir_DNA_pol_B_exonuc 139 517
IPR013697 DNA_pol_e_suA_C 1672 2094
No external refs found!