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Aliases : tig00000217_g19158.t1
Description : Chromatin structure-remodeling complex protein SYD OS=Arabidopsis thaliana
Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cpa|evm.model.tig00000217.25 | |
| Cluster | HCCA: Cluster_95 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre07.g325700 | 30774388 | ATP-dependent helicase BRM OS=Arabidopsis thaliana | 0.02 | OrthoFinder | |
| Cre08.g377200 | 30773522 | CHD3-type chromatin-remodeling factor PICKLE... | 0.02 | OrthoFinder | |
| Cre12.g508150 | 30793288 | Chromatin organisation.chromatin remodeling... | 0.04 | OrthoFinder | |
| Cre16.g647602 | 30777036 | ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana | 0.03 | OrthoFinder | |
| Cz01g25030.t1 | No alias | Helicase, C-terminal; Chromo domain; Domain of unknown... | 0.02 | OrthoFinder | |
| Cz02g31160.t1 | No alias | Helicase, C-terminal; SLIDE domain; SNF2-related,... | 0.04 | OrthoFinder | |
| Cz04g03240.t1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.03 | OrthoFinder | |
| Cz04g34020.t1 | No alias | Helicase, C-terminal; Chromo domain; SNF2-related,... | 0.01 | OrthoFinder | |
| Cz07g13180.t1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.02 | OrthoFinder | |
| Dusal.0024s00040.1 | 33202173 | SNF2-related, N-terminal domain [Interproscan]. | 0.02 | OrthoFinder | |
| Dusal.0035s00025.1 | 33196663 | SNF2-related, N-terminal domain [Interproscan]. | 0.02 | OrthoFinder | |
| Dusal.0357s00004.1 | 33189829 | SNF2-related, N-terminal domain; Helicase, C-terminal;... | 0.05 | OrthoFinder | |
| Dusal.0752s00002.1 | 33199466 | Domain of unknown function DUF3535; SNF2-related,... | 0.01 | OrthoFinder | |
| Dusal.1946s00001.1 | 33193641 | Helicase, C-terminal [Interproscan]. | 0.02 | OrthoFinder | |
| EOD05386 | No alias | Chromo domain; Helicase, C-terminal; SNF2-related,... | 0.02 | OrthoFinder | |
| EOD18155 | No alias | High mobility group box domain; ISWI, HAND domain;... | 0.04 | OrthoFinder | |
| EOD25651 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder | |
| EOD36557 | No alias | SNF2-related, N-terminal domain [Interproscan]. | 0.02 | OrthoFinder | |
| EOD36957 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.04 | OrthoFinder | |
| EOD38452 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder | |
| OT_07G04020.1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder | |
| OT_07G04400.1 | No alias | Helicase, C-terminal; ISWI, HAND domain; SNF2-related,... | 0.03 | OrthoFinder | |
| OT_11G00460.1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain;... | 0.02 | OrthoFinder | |
| PTI_02G06230.1 | No alias | Bromodomain; Helicase, C-terminal; Snf2, ATP coupling... | 0.02 | OrthoFinder | |
| PTI_04G04910.1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder | |
| PTI_10G00070.1 | No alias | Helicase, C-terminal; High mobility group box domain;... | 0.01 | OrthoFinder | |
| PTI_10G02350.1 | No alias | Chromo domain; SNF2-related, N-terminal domain [Interproscan]. | 0.02 | OrthoFinder | |
| PTI_12G00850.1 | No alias | Helicase, C-terminal; High mobility group box domain;... | 0.02 | OrthoFinder | |
| Sro19_g013190.1 | Contig446.g5983 | CHD3-type chromatin-remodeling factor | 0.01 | OrthoFinder | |
| Sro2_g001340.1 | Contig467.g6292 | CHD3-type chromatin-remodeling factor PICKLE | 0.02 | OrthoFinder | |
| Sro358_g125960.1 | Contig1210.g11383 | Probable chromatin-remodeling complex ATPase chain | 0.04 | OrthoFinder | |
| Sro847_g210300.1 | Contig4605.g34375 | CHD3-type chromatin-remodeling factor | 0.02 | OrthoFinder | |
| TP11G02170.1 | No alias | SNF2-related, N-terminal domain; Chromo domain;... | 0.01 | OrthoFinder | |
| Transcript_contig_54441 | 54441 | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.01 | OrthoFinder | |
| Vocar.0016s0256.1 | 32897896 | SLIDE domain; ISWI, HAND domain; Helicase, C-terminal;... | 0.03 | OrthoFinder | |
| Vocar.0019s0100.1 | 32892722 | Chromo domain; Helicase, C-terminal; SNF2-related,... | 0.02 | OrthoFinder | |
| Vocar.0053s0011.1 | 32887634 | Domain of unknown function DUF1086; Helicase,... | 0.02 | OrthoFinder | |
| XM_002503125.1 | MICPUN_91017, 91017 | SNF2 super family | 0.02 | OrthoFinder | |
| XM_002503134.1 | MICPUN_59225, 59225 | SNF2 super family | 0.02 | OrthoFinder | |
| XM_002504726.1 | MICPUN_62221, 62221 | SNF2 super family | 0.02 | OrthoFinder | |
| XM_002509111.1 | MICPUN_62843, 62843 | SNF2 super family | 0.01 | OrthoFinder | |
| XM_003061313.1 | MicpuC2_50939, 50939 | SNF2 super family | 0.03 | OrthoFinder | |
| XM_003061952.1 | MicpuC2_51787, 51787 | SNF2 super family | 0.01 | OrthoFinder | |
| lcl|BLLF01000001.1_cds_GFH05549.1_26 | HaLaN_00029, GFH05549 | Helicase, C-terminal; SLIDE domain; ISWI, HAND domain... | 0.02 | OrthoFinder | |
| lcl|BLLF01000629.1_cds_GFH13582.1_8059 | HaLaN_09500, GFH13582 | Helicase, C-terminal [Interproscan]. | 0.02 | OrthoFinder | |
| lcl|BLLF01003474.1_cds_GFH27437.1_21914 | HaLaN_25757, GFH27437 | SNF2-related, N-terminal domain [Interproscan]. | 0.02 | OrthoFinder | |
| lcl|LHPG02000002.1_cds_PRW60614.1_4411 | PRW60614 | ATP-dependent helicase BRM | 0.03 | OrthoFinder | |
| lcl|LHPG02000005.1_cds_PRW58677.1_7830 | PRW58677 | Chromatin structure-remodeling complex SYD-like isoform X1 | 0.03 | OrthoFinder | |
| lcl|LHPG02000008.1_cds_PRW56740.1_9705 | PRW56740 | Chromatin-remodeling complex ATPase chain | 0.02 | OrthoFinder | |
| lcl|VRMN01000001.1_cds_KAA8498955.1_7908 | KAA8498955 | SWI/SNF chromatin-remodeling complex subunit snf22 | 0.01 | OrthoFinder | |
| lcl|VRMN01000004.1_cds_KAA8494382.1_2912 | KAA8494382 | ISWI chromatin-remodeling complex ATPase CHR17 | 0.02 | OrthoFinder | |
| lcl|VRMN01000008.1_cds_KAA8492942.1_2678 | KAA8492942 | TATA-binding protein-associated factor | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Enrichment |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Enrichment |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Enrichment |
| BP | GO:0000723 | telomere maintenance | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003678 | DNA helicase activity | IEP | Enrichment |
| MF | GO:0003729 | mRNA binding | IEP | Enrichment |
| MF | GO:0003824 | catalytic activity | IEP | Enrichment |
| MF | GO:0004386 | helicase activity | IEP | Enrichment |
| MF | GO:0004518 | nuclease activity | IEP | Enrichment |
| MF | GO:0004659 | prenyltransferase activity | IEP | Enrichment |
| MF | GO:0004672 | protein kinase activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| MF | GO:0005515 | protein binding | IEP | Enrichment |
| MF | GO:0005524 | ATP binding | IEP | Enrichment |
| CC | GO:0005685 | U1 snRNP | IEP | Enrichment |
| CC | GO:0005789 | endoplasmic reticulum membrane | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006259 | DNA metabolic process | IEP | Enrichment |
| BP | GO:0006281 | DNA repair | IEP | Enrichment |
| BP | GO:0006302 | double-strand break repair | IEP | Enrichment |
| BP | GO:0006303 | double-strand break repair via nonhomologous end joining | IEP | Enrichment |
| BP | GO:0006397 | mRNA processing | IEP | Enrichment |
| BP | GO:0006464 | cellular protein modification process | IEP | Enrichment |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0006950 | response to stress | IEP | Enrichment |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Enrichment |
| MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| MF | GO:0008318 | protein prenyltransferase activity | IEP | Enrichment |
| BP | GO:0008380 | RNA splicing | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| BP | GO:0016071 | mRNA metabolic process | IEP | Enrichment |
| MF | GO:0016301 | kinase activity | IEP | Enrichment |
| BP | GO:0016579 | protein deubiquitination | IEP | Enrichment |
| MF | GO:0016740 | transferase activity | IEP | Enrichment |
| MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | Enrichment |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Enrichment |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | Enrichment |
| MF | GO:0016887 | ATPase | IEP | Enrichment |
| MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
| BP | GO:0018342 | protein prenylation | IEP | Enrichment |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Enrichment |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
| BP | GO:0032200 | telomere organization | IEP | Enrichment |
| MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
| BP | GO:0033554 | cellular response to stress | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
| MF | GO:0036094 | small molecule binding | IEP | Enrichment |
| BP | GO:0036211 | protein modification process | IEP | Enrichment |
| BP | GO:0042592 | homeostatic process | IEP | Enrichment |
| MF | GO:0043167 | ion binding | IEP | Enrichment |
| MF | GO:0043168 | anion binding | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0043412 | macromolecule modification | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Enrichment |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
| BP | GO:0050896 | response to stimulus | IEP | Enrichment |
| BP | GO:0051716 | cellular response to stimulus | IEP | Enrichment |
| BP | GO:0060249 | anatomical structure homeostasis | IEP | Enrichment |
| BP | GO:0065008 | regulation of biological quality | IEP | Enrichment |
| BP | GO:0070646 | protein modification by small protein removal | IEP | Enrichment |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Enrichment |
| BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| BP | GO:0097354 | prenylation | IEP | Enrichment |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | Enrichment |
| CC | GO:0120114 | Sm-like protein family complex | IEP | Enrichment |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Enrichment |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000330 | SNF2_N | 276 | 502 |
| No external refs found! |