Sro1649_g288630.1 (Contig3529.g27273)


Aliases : Contig3529.g27273

Description : Prolycopene isomerase, chloroplastic


Gene families : OG_01_0000207 (OrthoFinder) Phylogenetic Tree(s): OG0000207_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1649_g288630.1
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001095.9 tig00001095_g7025.t1 Prolycopene isomerase, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder
Cpa|evm.model.tig00001258.10 tig00001258_g7832.t1 No description available 0.09 OrthoFinder
Cpa|evm.model.tig00020723.8 tig00020723_g13427.t1 No description available 0.08 OrthoFinder
Cre09.g407200 30780595 Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum 0.03 OrthoFinder
Cz14g22040.t1 No alias Amine oxidase [Interproscan]. 0.06 OrthoFinder
Dusal.0111s00019.1 33199801 Amine oxidase [Interproscan]. 0.03 OrthoFinder
Dusal.0195s00005.1 33196565 Amine oxidase [Interproscan]. 0.03 OrthoFinder
EOD31741 No alias Phytoene desaturase [Ensembl]. 0.02 OrthoFinder
EOD40572 No alias Amine oxidase [Interproscan]. 0.04 OrthoFinder
PTI_06G02910.1 No alias Amine oxidase [Interproscan]. 0.01 OrthoFinder
TP05G02600.1 No alias Amine oxidase [Interproscan]. 0.02 OrthoFinder
TP07G04730.1 No alias NAD(P)-binding Rossmann-like domain [Interproscan]. 0.03 OrthoFinder
Transcript_contig_61270 61270 Hypothetical protein 0.02 OrthoFinder
Transcript_contig_78738 78738 Hypothetical protein 0.06 OrthoFinder
Vocar.0018s0001.1 32898723 Amine oxidase [Interproscan]. 0.02 OrthoFinder
Vocar.0032s0058.1 32893700 Amine oxidase [Interproscan]. 0.01 OrthoFinder
XM_002503327.1 MICPUN_113305, 113305 FAD dependent oxidoreductase 0.01 OrthoFinder
XM_002505732.1 MICPUN_96715, 96715 Amine oxidase 0.02 OrthoFinder
XM_002506999.1 MICPUN_92711, 92711 Amine oxidase [Interproscan]. 0.02 OrthoFinder
XM_003054830.1 MicpuC2_50019, 50019 NAD(P)-binding Rossmann-like domain [Interproscan]. 0.01 OrthoFinder
XM_003055318.1 MicpuC2_13509, 13509 Amine oxidase [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000127.1_cds_GFH07954.1_2431 HaLaN_02839, GFH07954 Prolycopene isomerase, chloroplastic 0.03 OrthoFinder
lcl|BLLF01000280.1_cds_GFH10007.1_4484 HaLaN_05249, GFH10007 Prolycopene isomerase, chloroplastic 0.02 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44291.1_2128 PRW44291 ABC transporter A family member 7-like isoform B 0.02 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44628.1_2401 PRW44628 Carotene isomerase 0.02 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33144.1_3623 PRW33144 Carotene isomerase 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
CC GO:0005886 plasma membrane IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
InterPro domains Description Start Stop
IPR002937 Amino_oxidase 94 406
No external refs found!