Sro1631_g287230.1 (Contig2461.g20146)

Aliases : Contig2461.g20146

Description : Leptomycin B resistance protein pmd1

Gene families : OG_01_0000036 (OrthoFinder) Phylogenetic Tree(s): OG0000036_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sro1631_g287230.1
Cluster	HCCA: Cluster_227

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020952.7	tig00020952_g16473.t1	ABC transporter B family member 2 OS=Arabidopsis thaliana	0.01	OrthoFinder
Cpa\|evm.model.tig00021127.70	tig00021127_g18747.t1	ABC transporter B family member 25 OS=Oryza sativa...	0.01	OrthoFinder
Cre02.g083354	30785555	Solute transport.primary active transport.ABC...	0.02	OrthoFinder
EOD34923	No alias	Putative ABC transporter [Ensembl].	0.02	OrthoFinder
EOD35541	No alias	Putative ABC transporter [Ensembl].	0.02	OrthoFinder
XM_002505884.1	MICPUN_88240, 88240	ATP-binding cassette superfamily	0.05	OrthoFinder
lcl\|BLLF01002502.1_cds_GFH24318.1_18795	HaLaN_22091, GFH24318	ATP-binding cassette transporter	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016887	ATPase	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	Enrichment
CC	GO:0043227	membrane-bounded organelle	IEP	Enrichment
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	746	892
IPR003439	ABC_transporter-like_ATP-bd	454	603
IPR011527	ABC1_TM_dom	1024	1321
IPR011527	ABC1_TM_dom	48	297

External Links

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Sro1631_g287230.1 (Contig2461.g20146)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation