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  5. Sro1609_g285730.1

Sro1609_g285730.1 (Contig342.g4644)


Aliases : Contig342.g4644

Description : Rhs element vgr protein


Gene families : OG_01_0000934 (OrthoFinder) Phylogenetic Tree(s): OG0000934_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1609_g285730.1
Cluster HCCA: Cluster_307

Target Alias Description ECC score Gene Family Method Actions
Sro115_g056660.1 Contig88.g932 Hypothetical protein 0.07 OrthoFinder
Sro115_g056670.1 Contig88.g933 Hypothetical protein 0.05 OrthoFinder
Sro115_g056680.1 Contig88.g934 Hypothetical protein 0.04 OrthoFinder
Sro115_g056690.1 Contig88.g935 Hypothetical protein 0.04 OrthoFinder
Sro115_g056700.1 Contig88.g936 Hypothetical protein 0.04 OrthoFinder
Sro115_g056710.1 Contig88.g937 Hypothetical protein 0.04 OrthoFinder
Sro115_g056720.1 Contig88.g938 Hypothetical protein 0.03 OrthoFinder
Sro115_g056730.1 Contig88.g939 Hypothetical protein 0.05 OrthoFinder
Sro115_g056740.1 Contig88.g940 Inherit from NOG: Hemolysin-type calcium-binding 0.06 OrthoFinder
Sro1609_g285750.1 Contig342.g4646 ECF subfamily RNA polymerase sigma-24 subunit 0.08 OrthoFinder
Sro1609_g285760.1 Contig342.g4647 Hypothetical protein 0.05 OrthoFinder
Sro36_g022950.1 Contig97.g1150 AAI 0.03 OrthoFinder
Sro36_g022950.3 No alias Hypothetical protein 0.03 OrthoFinder
Sro520_g159160.2 No alias Hypothetical protein 0.03 OrthoFinder
Sro941_g222600.1 Contig3325.g26143 CLECT 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005216 ion channel activity IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
MF GO:0015276 ligand-gated ion channel activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
MF GO:0022834 ligand-gated channel activity IEP Enrichment
MF GO:0022836 gated channel activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment

No InterPro domains available for this sequence

No external refs found!