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  5. Sro1516_g279100.1

Sro1516_g279100.1 (Contig3898.g29880)


Aliases : Contig3898.g29880

Description : RNA helicase HAS1


Gene families : OG_01_0000319 (OrthoFinder) Phylogenetic Tree(s): OG0000319_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1516_g279100.1
Cluster HCCA: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000441.11 tig00000441_g705.t1 DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.01 OrthoFinder
Cpa|evm.model.tig00000441.12 tig00000441_g705.t1 DEAD-box ATP-dependent RNA helicase 27 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00000615.43 tig00000615_g2571.t1 DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cre03.g156150 30787649 DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana 0.18 OrthoFinder
Cre03.g188550 30787162 DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.09 OrthoFinder
Cre07.g314900 30775364 DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.23 OrthoFinder
Cz01g13050.t1 No alias Domain of unknown function DUF4217; Helicase,... 0.11 OrthoFinder
Cz04g34220.t1 No alias Domain of unknown function DUF4217; Helicase,... 0.14 OrthoFinder
Cz14g21220.t1 No alias Domain of unknown function DUF4217; Helicase,... 0.06 OrthoFinder
Dusal.0099s00004.1 33188808 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
EOD29706 No alias Helicase, C-terminal; Domain of unknown function... 0.13 OrthoFinder
EOD32210 No alias Helicase, C-terminal [Interproscan]. 0.03 OrthoFinder
OT_08G01350.1 No alias Helicase, C-terminal; Domain of unknown function... 0.08 OrthoFinder
OT_10G00320.1 No alias Helicase, C-terminal; Domain of unknown function... 0.19 OrthoFinder
OT_11G02720.1 No alias Helicase, C-terminal; Domain of unknown function... 0.03 OrthoFinder
PTI_09G03560.1 No alias Helicase, C-terminal; Domain of unknown function... 0.24 OrthoFinder
PTI_11G00580.1 No alias Helicase, C-terminal; Domain of unknown function... 0.12 OrthoFinder
PTI_14G03510.1 No alias Helicase, C-terminal; Domain of unknown function... 0.23 OrthoFinder
TP03G01160.1 No alias Domain of unknown function DUF4217; Helicase,... 0.06 OrthoFinder
TP03G05140.1 No alias Domain of unknown function DUF4217; Helicase,... 0.16 OrthoFinder
Transcript_contig_2473 2473 Helicase, C-terminal; Domain of unknown function DUF4217... 0.11 OrthoFinder
UNPLg00617.t1 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.01 OrthoFinder
Vocar.0011s0222.1 32895328 Domain of unknown function DUF4217; DEAD/DEAH box... 0.02 OrthoFinder
Vocar.0019s0050.1 32892772 Domain of unknown function DUF4217; DEAD/DEAH box... 0.04 OrthoFinder
Vocar.0072s0011.1 32898787 Domain of unknown function DUF4217; DEAD/DEAH box... 0.02 OrthoFinder
XM_002503194.1 MICPUN_82943, 82943 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.14 OrthoFinder
XM_002505580.1 MICPUN_87736, 87736 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.15 OrthoFinder
XM_002508993.1 MICPUN_66348, 66348 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.12 OrthoFinder
XM_003061213.1 MicpuC2_41358, 41358 Helicase, C-terminal; Domain of unknown function... 0.05 OrthoFinder
XM_003063698.1 MicpuC2_22865, 22865 Helicase, C-terminal; Domain of unknown function... 0.08 OrthoFinder
lcl|BLLF01000028.1_cds_GFH06227.1_704 HaLaN_00823, GFH06227 RNA helicase 0.03 OrthoFinder
lcl|BLLF01000456.1_cds_GFH11993.1_6470 HaLaN_07604, GFH11993 RNA helicase 0.05 OrthoFinder
lcl|BLLF01002892.1_cds_GFH25696.1_20173 HaLaN_23701, GFH25696 RNA helicase 0.02 OrthoFinder
lcl|BLLF01003854.1_cds_GFH28385.1_22862 HaLaN_26865, GFH28385 RNA helicase 0.05 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60362.1_4133 PRW60362 DEAD-box ATP-dependent RNA helicase 17 0.06 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59153.1_7055 PRW59153 ATP-dependent RNA helicase HAS1 0.17 OrthoFinder
lcl|LHPG02000018.1_cds_PRW33079.1_3833 PRW33079 DEAD-box ATP-dependent RNA helicase 32 0.17 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498279.1_7232 KAA8498279 ATP-dependent RNA helicase HAS1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008837 diaminopimelate epimerase activity IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
MF GO:0047661 amino-acid racemase activity IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 181 354
IPR001650 Helicase_C 397 500
IPR025313 DUF4217 542 602
No external refs found!