- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : Contig507.g6747
Description : ECF subfamily RNA polymerase sigma-24 subunit
Gene families : OG_01_0000220 (OrthoFinder) Phylogenetic Tree(s): OG0000220_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Sro1513_g278830.1 | |
| Cluster | HCCA: Cluster_250 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Sro10_g008190.1 | Contig1.g43 | ECF subfamily RNA polymerase sigma-24 subunit | 0.04 | OrthoFinder | |
| Sro144_g067110.1 | Contig3873.g29810 | ECF subfamily RNA polymerase sigma-24 subunit | 0.05 | OrthoFinder | |
| Sro144_g067150.1 | Contig3873.g29814 | Domain protein | 0.03 | OrthoFinder | |
| Sro212_g088130.1 | Contig3756.g28796 | Signal recognition particle-docking protein FtsY | 0.04 | OrthoFinder | |
| Sro257_g100830.1 | Contig2018.g17262 | Hypothetical protein | 0.04 | OrthoFinder | |
| Sro379_g130430.1 | Contig3398.g26560 | Cathepsin | 0.03 | OrthoFinder | |
| Sro437_g142830.1 | Contig994.g10049 | Domain protein | 0.04 | OrthoFinder | |
| Sro459_g147250.1 | Contig4657.g34665 | Hypothetical protein | 0.03 | OrthoFinder | |
| Sro459_g147260.1 | Contig4657.g34666 | Hypothetical protein | 0.04 | OrthoFinder | |
| Sro459_g147280.1 | Contig4657.g34668 | ECF subfamily RNA polymerase sigma-24 subunit | 0.03 | OrthoFinder | |
| Sro46_g027260.1 | Contig1636.g14716 | Hypothetical protein | 0.03 | OrthoFinder | |
| Sro57_g033500.1 | Contig284.g3718 | Hypothetical protein | 0.04 | OrthoFinder | |
| Sro8_g006650.2 | No alias | Hypothetical protein | 0.09 | OrthoFinder | |
| Sro8_g006730.1 | Contig89.g986 | ECF subfamily RNA polymerase sigma-24 subunit | 0.04 | OrthoFinder | |
| Sro8_g006830.1 | Contig89.g996 | Hemolysin-type calcium-binding repeat (2 copies) | 0.04 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEP | Enrichment |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Enrichment |
| MF | GO:0004888 | transmembrane signaling receptor activity | IEP | Enrichment |
| MF | GO:0004930 | G protein-coupled receptor activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| CC | GO:0005575 | cellular_component | IEP | Enrichment |
| CC | GO:0005576 | extracellular region | IEP | Enrichment |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0007186 | G protein-coupled receptor signaling pathway | IEP | Enrichment |
| MF | GO:0008061 | chitin binding | IEP | Enrichment |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Enrichment |
| BP | GO:0010468 | regulation of gene expression | IEP | Enrichment |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Enrichment |
| CC | GO:0018995 | host cellular component | IEP | Enrichment |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0019222 | regulation of metabolic process | IEP | Enrichment |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Enrichment |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Enrichment |
| CC | GO:0033643 | host cell part | IEP | Enrichment |
| CC | GO:0033646 | host intracellular part | IEP | Enrichment |
| CC | GO:0033647 | host intracellular organelle | IEP | Enrichment |
| CC | GO:0033648 | host intracellular membrane-bounded organelle | IEP | Enrichment |
| MF | GO:0038023 | signaling receptor activity | IEP | Enrichment |
| CC | GO:0042025 | host cell nucleus | IEP | Enrichment |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | Enrichment |
| BP | GO:0050789 | regulation of biological process | IEP | Enrichment |
| BP | GO:0050794 | regulation of cellular process | IEP | Enrichment |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Enrichment |
| MF | GO:0060089 | molecular transducer activity | IEP | Enrichment |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0065007 | biological regulation | IEP | Enrichment |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Enrichment |
| CC | GO:0110165 | cellular anatomical entity | IEP | Enrichment |
| MF | GO:0140110 | transcription regulator activity | IEP | Enrichment |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Enrichment |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Enrichment |
No InterPro domains available for this sequence
| No external refs found! |