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  5. Sro1505_g278170.1

Sro1505_g278170.1 (Contig474.g6439)


Aliases : Contig474.g6439

Description : Dependent RNA helicase


Gene families : OG_01_0002520 (OrthoFinder) Phylogenetic Tree(s): OG0002520_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1505_g278170.1
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022075.32 tig00022075_g23594.t1 Putative DEAD-box ATP-dependent RNA helicase 29... 0.05 OrthoFinder
Cre12.g513701 30791778 DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa... 0.23 OrthoFinder
Cz05g10330.t1 No alias Helicase, C-terminal; DBP10, C-terminal; DEAD/DEAH box... 0.26 OrthoFinder
Dusal.0175s00005.1 33199720 DBP10, C-terminal; Helicase, C-terminal; DEAD/DEAH box... 0.07 OrthoFinder
EOD14476 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.09 OrthoFinder
OT_06G03920.1 No alias Helicase, C-terminal; DBP10, C-terminal; DEAD/DEAH box... 0.18 OrthoFinder
PTI_06G03220.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.36 OrthoFinder
Transcript_contig_54936 54936 Helicase, C-terminal; DBP10, C-terminal; DEAD/DEAH box... 0.09 OrthoFinder
Vocar.0006s0298.1 32894289 DBP10, C-terminal; DEAD/DEAH box helicase domain;... 0.01 OrthoFinder
XM_002499996.1 MICPUN_78680, 78680 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.13 OrthoFinder
XM_003057837.1 MicpuC2_16058, 16058 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.16 OrthoFinder
lcl|BLLF01000309.1_cds_GFH10372.1_4849 HaLaN_05672, GFH10372 DEAD-box ATP-dependent RNA helicase 29 0.02 OrthoFinder
lcl|BLLF01000359.1_cds_GFH10929.1_5406 HaLaN_06335, GFH10929 DEAD-box ATP-dependent RNA helicase 29 0.01 OrthoFinder
lcl|BLLF01002986.1_cds_GFH26001.1_20478 HaLaN_24070, GFH26001 DEAD-box ATP-dependent RNA helicase 29 0.03 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33126.1_3489 PRW33126 DEAD-box ATP-dependent RNA helicase 29 isoform X1 isoform A 0.2 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492805.1_2541 KAA8492805 ATP-dependent RNA helicase DDX54 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003724 RNA helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR012541 DBP10_C 760 828
IPR011545 DEAD/DEAH_box_helicase_dom 42 215
IPR001650 Helicase_C 273 373
No external refs found!