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  5. Sro1438_g272650.1

Sro1438_g272650.1 (Contig3435.g26744)


Aliases : Contig3435.g26744

Description : Sel1 domain protein repeat-containing protein


Gene families : OG_01_0000179 (OrthoFinder) Phylogenetic Tree(s): OG0000179_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1438_g272650.1
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Sro1011_g230970.1 Contig997.g10070 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro1011_g231050.1 Contig997.g10078 SAM and U-box domain-containing protein 1 0.06 OrthoFinder
Sro1154_g247120.1 Contig2345.g19268 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro1215_g253210.1 Contig2655.g21465 Sel1 domain protein repeat-containing protein 0.06 OrthoFinder
Sro1588_g284330.1 Contig4233.g32103 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro25_g017160.1 Contig1417.g13055 U box domain [Interproscan]. 0.02 OrthoFinder
Sro2646_g333570.1 Contig1915.g16542 Putative E3 ubiquitin-protein ligase LIN 0.02 OrthoFinder
Sro2785_g337000.1 Contig449.g6083 U box domain [Interproscan]. 0.06 OrthoFinder
Sro341_g121570.1 Contig3952.g30289 Sel1 domain protein repeat-containing protein 0.06 OrthoFinder
Sro3525_g348930.1 Contig1800.g15880 Sel1 domain protein repeat-containing protein 0.04 OrthoFinder
Sro4045_g352650.1 Contig2319.g19150 Hypothetical protein 0.02 OrthoFinder
Sro639_g179810.1 Contig197.g2302 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro65_g036920.1 Contig155.g1762 Hypothetical protein 0.06 OrthoFinder
Sro65_g036930.1 Contig155.g1763 Sel1 domain protein repeat-containing protein 0.03 OrthoFinder
Sro793_g203260.1 Contig534.g6934 Sel1 domain protein repeat-containing protein 0.07 OrthoFinder
Sro793_g203310.1 Contig534.g6939 Sel1 domain protein repeat-containing protein 0.02 OrthoFinder
Sro820_g207210.1 Contig34.g203 Sel1 domain protein repeat-containing protein 0.02 OrthoFinder
Sro870_g213590.1 Contig1807.g15929 Sel1 domain protein repeat-containing protein 0.05 OrthoFinder
Sro963_g225240.1 Contig3377.g26425 Sel1 domain protein repeat-containing protein 0.04 OrthoFinder
Sro963_g225290.2 No alias U box domain; Sel1-like repeat [Interproscan]. 0.03 OrthoFinder
Sro963_g225330.1 Contig3377.g26434 ERAD-associated E3 ubiquitin-protein ligase component 0.09 OrthoFinder
Sro983_g227810.1 Contig79.g820 Sel1 domain protein repeat-containing protein 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR006597 Sel1-like 158 186
IPR006597 Sel1-like 116 149
IPR006597 Sel1-like 189 218
IPR003613 Ubox_domain 13 63
No external refs found!