1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro140_g065360.1

Sro140_g065360.1 (Contig1537.g13952)


Aliases : Contig1537.g13952

Description : TIC 62, chloroplastic


Gene families : OG_01_0000465 (OrthoFinder) Phylogenetic Tree(s): OG0000465_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro140_g065360.1
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000093.95 tig00000093_g3522.t1 No description available 0.01 OrthoFinder
Cpa|evm.model.tig00000492.83 tig00000492_g1477.t1 No description available 0.08 OrthoFinder
Cpa|evm.model.tig00001657.7 tig00001657_g9546.t1 No description available 0.06 OrthoFinder
Cre06.g274650 30780126 No description available 0.06 OrthoFinder
Cz05g03280.t1 No alias NADH:ubiquinone oxidoreductase intermediate-associated... 0.04 OrthoFinder
Cz08g05160.t1 No alias NAD(P)-binding domain; NADH:ubiquinone oxidoreductase... 0.02 OrthoFinder
Dusal.0322s00010.1 33197813 NADH:ubiquinone oxidoreductase intermediate-associated... 0.04 OrthoFinder
PTI_01G05890.1 No alias NAD(P)-binding domain [Interproscan]. 0.1 OrthoFinder
TP06G01740.1 No alias NADH:ubiquinone oxidoreductase intermediate-associated... 0.02 OrthoFinder
TP07G04110.1 No alias NADH:ubiquinone oxidoreductase intermediate-associated... 0.01 OrthoFinder
TP17G01510.1 No alias NAD(P)-binding domain [Interproscan]. 0.04 OrthoFinder
Transcript_contig_130 130 NAD(P)-binding domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_62084 62084 NAD(P)-binding domain; NADH:ubiquinone oxidoreductase... 0.02 OrthoFinder
Vocar.0002s0379.1 32891039 NAD(P)-binding domain; NADH:ubiquinone oxidoreductase... 0.02 OrthoFinder
Vocar.0026s0043.1 32892451 NAD(P)-binding domain; NADH:ubiquinone oxidoreductase... 0.01 OrthoFinder
XM_002504825.1 MICPUN_103020, 103020 NADH:ubiquinone oxidoreductase intermediate-associated... 0.01 OrthoFinder
XM_003056717.1 MicpuC2_56155, 56155 NADH:ubiquinone oxidoreductase intermediate-associated... 0.01 OrthoFinder
XM_003060686.1 MicpuC2_60248, 60248 NADH:ubiquinone oxidoreductase intermediate-associated... 0.02 OrthoFinder
lcl|BLLF01002010.1_cds_GFH22304.1_16781 HaLaN_19751, GFH22304 NAD(P)-binding domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01003429.1_cds_GFH27309.1_21786 HaLaN_25612, GFH27309 NADH:ubiquinone oxidoreductase intermediate-associated... 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW55975.1_10105 PRW55975 Nadh:ubiquinone oxidoreductase complex i... 0.05 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491790.1_4798 KAA8491790 Putative complex I intermediate-associated protein 30 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
CC GO:0005886 plasma membrane IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015297 antiporter activity IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
BP GO:1903825 organic acid transmembrane transport IEP Enrichment
BP GO:1905039 carboxylic acid transmembrane transport IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR016040 NAD(P)-bd_dom 60 285
No external refs found!